Cargando…

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

BACKGROUND: High-throughput sequencing makes it possible to rapidly obtain thousands of 16S rDNA sequences from environmental samples. Bioinformatic tools for the analyses of large 16S rDNA sequence databases are needed to comprehensively describe and compare these datasets. RESULTS: FastGroupII is...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yu, Yanan, Breitbart, Mya, McNairnie, Pat, Rohwer, Forest
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1386709/ https://www.ncbi.nlm.nih.gov/pubmed/16464253 http://dx.doi.org/10.1186/1471-2105-7-57

Ejemplares similares

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
por: Angly, Florent, et al.
Publicado: (2005)

FastGroup: A program to dereplicate libraries of 16S rDNA sequences
por: Seguritan, Victor, et al.
Publicado: (2001)

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
por: Djokic-Petrovic, Marija, et al.
Publicado: (2017)

Biotite: new tools for a versatile Python bioinformatics library
por: Kunzmann, Patrick, et al.
Publicado: (2023)

Extending the BEAGLE library to a multi-FPGA platform
por: Jin, Zheming, et al.
Publicado: (2013)

MAPI: towards the integrated exploitation of bioinformatics Web Services
por: Ramirez, Sergio, et al.
Publicado: (2011)

MEMOSys: Bioinformatics platform for genome-scale metabolic models
por: Pabinger, Stephan, et al.
Publicado: (2011)

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity
por: Dwivedi, Bhakti, et al.
Publicado: (2012)

Web Apollo: a web-based genomic annotation editing platform
por: Lee, Eduardo, et al.
Publicado: (2013)

Seahawk: moving beyond HTML in Web-based bioinformatics analysis
por: Gordon, Paul MK, et al.
Publicado: (2007)

libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny
por: Butt, Davin, et al.
Publicado: (2005)

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
por: Schmieder, Robert, et al.
Publicado: (2010)

Open discovery: An integrated live Linux platform of Bioinformatics tools
por: Vetrivel, Umashankar, et al.
Publicado: (2008)

G-DOC Plus – an integrative bioinformatics platform for precision medicine
por: Bhuvaneshwar, Krithika, et al.
Publicado: (2016)

WebMGA: a customizable web server for fast metagenomic sequence analysis
por: Wu, Sitao, et al.
Publicado: (2011)

Blazing Signature Filter: a library for fast pairwise similarity comparisons
por: Lee, Joon-Yong, et al.
Publicado: (2018)

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases
por: Schweiger, Dominik, et al.
Publicado: (2014)

GeneDig: a web application for accessing genomic and bioinformatics knowledge
por: Suciu, Radu M, et al.
Publicado: (2015)

WebArray: an online platform for microarray data analysis
por: Xia, Xiaoqin, et al.
Publicado: (2005)

rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics
por: Bonet, Jaume, et al.
Publicado: (2019)

A web-based library consult service for evidence-based medicine: Technical development
por: Schwartz, Alan, et al.
Publicado: (2006)

Genomics Portals: integrative web-platform for mining genomics data
por: Shinde, Kaustubh, et al.
Publicado: (2010)

JBrowse: a dynamic web platform for genome visualization and analysis
por: Buels, Robert, et al.
Publicado: (2016)

A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank
por: Smelter, Andrey, et al.
Publicado: (2017)

GLOSSary: the GLobal Ocean 16S subunit web accessible resource
por: Tangherlini, M., et al.
Publicado: (2018)

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree
por: Dib, Linda, et al.
Publicado: (2015)

CompPhy: a web-based collaborative platform for comparing phylogenies
por: Fiorini, Nicolas, et al.
Publicado: (2014)

QueryOR: a comprehensive web platform for genetic variant analysis and prioritization
por: Bertoldi, Loris, et al.
Publicado: (2017)

amica: an interactive and user-friendly web-platform for the analysis of proteomics data
por: Didusch, Sebastian, et al.
Publicado: (2022)

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website
por: Good, Benjamin M, et al.
Publicado: (2006)

MACBenAbim: A Multi-platform Mobile Application for searching keyterms in Computational Biology and Bioinformatics
por: Oluwagbemi, Olugbenga O, et al.
Publicado: (2012)

CaPSID: A bioinformatics platform for computational pathogen sequence identification in human genomes and transcriptomes
por: Borozan, Ivan, et al.
Publicado: (2012)

Web-TCGA: an online platform for integrated analysis of molecular cancer data sets
por: Deng, Mario, et al.
Publicado: (2016)

ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation
por: Dong, Jie, et al.
Publicado: (2015)

MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries
por: Chen, Wen Han, et al.
Publicado: (2011)

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology
por: Moreno, Pablo, et al.
Publicado: (2015)

MetaPro: a web-based metabolomics application for LC-MS data batch inspection and library curation
por: An, Shaowei, et al.
Publicado: (2023)

LAPIS is a fast web API for massive open virus sequencing data
por: Chen, Chaoran, et al.
Publicado: (2023)

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
por: Bare, J Christopher, et al.
Publicado: (2007)

MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression
por: Teng, Chin-Sheng, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_pp4hj8pvm2hc4ln4act0rne5bd