Software and methods for oligonucleotide and cDNA array data analysis

Two HTML-based programs were developed to analyze and filter gene-expression data: 'Bullfrog' for Affymetrix oligonucleotide arrays and 'Spot' for custom cDNA arrays. The programs provide intuitive data-filtering tools through an easy-to-use interface. A background subtraction an...

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Detalles Bibliográficos
Autores principales: Zapala, Matthew A, Lockhart, Daniel J, Pankratz, Daniel G, Garcia, Anthony J, Barlow, Carrolee, Lockhart, David J
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2002
Materias:
Software Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139376/
https://www.ncbi.nlm.nih.gov/pubmed/12093384
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author Zapala, Matthew A
Lockhart, Daniel J
Pankratz, Daniel G
Garcia, Anthony J
Barlow, Carrolee
Lockhart, David J
author_facet Zapala, Matthew A
Lockhart, Daniel J
Pankratz, Daniel G
Garcia, Anthony J
Barlow, Carrolee
Lockhart, David J
author_sort Zapala, Matthew A
collection PubMed
description Two HTML-based programs were developed to analyze and filter gene-expression data: 'Bullfrog' for Affymetrix oligonucleotide arrays and 'Spot' for custom cDNA arrays. The programs provide intuitive data-filtering tools through an easy-to-use interface. A background subtraction and normalization program for cDNA arrays was also built that provides an informative summary report with data-quality assessments. These programs are freeware to aid in the analysis of gene-expression results and facilitate the search for genes responsible for interesting biological processes and phenotypes.
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spelling pubmed-1393762003-03-03 Software and methods for oligonucleotide and cDNA array data analysis Zapala, Matthew A Lockhart, Daniel J Pankratz, Daniel G Garcia, Anthony J Barlow, Carrolee Lockhart, David J Genome Biol Software Report Two HTML-based programs were developed to analyze and filter gene-expression data: 'Bullfrog' for Affymetrix oligonucleotide arrays and 'Spot' for custom cDNA arrays. The programs provide intuitive data-filtering tools through an easy-to-use interface. A background subtraction and normalization program for cDNA arrays was also built that provides an informative summary report with data-quality assessments. These programs are freeware to aid in the analysis of gene-expression results and facilitate the search for genes responsible for interesting biological processes and phenotypes. BioMed Central 2002 2002-05-23 /pmc/articles/PMC139376/ /pubmed/12093384 Text en Copyright © 2002 Zapala et al., licensee BioMed Central Ltd
spellingShingle Software Report
Zapala, Matthew A
Lockhart, Daniel J
Pankratz, Daniel G
Garcia, Anthony J
Barlow, Carrolee
Lockhart, David J
Software and methods for oligonucleotide and cDNA array data analysis
title Software and methods for oligonucleotide and cDNA array data analysis
title_full Software and methods for oligonucleotide and cDNA array data analysis
title_fullStr Software and methods for oligonucleotide and cDNA array data analysis
title_full_unstemmed Software and methods for oligonucleotide and cDNA array data analysis
title_short Software and methods for oligonucleotide and cDNA array data analysis
title_sort software and methods for oligonucleotide and cdna array data analysis
topic Software Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139376/
https://www.ncbi.nlm.nih.gov/pubmed/12093384
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