Amplification of the Gene Ontology annotation of Affymetrix probe sets

BACKGROUND: The annotations of Affymetrix DNA microarray probe sets with Gene Ontology terms are carefully selected for correctness. This results in very accurate but incomplete annotations which is not always desirable for microarray experiment evaluation. RESULTS: Here we present a protocol to amp...

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Detalles Bibliográficos
Autores principales: Muro, Enrique M, Perez-Iratxeta, Carolina, Andrade-Navarro, Miguel A
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1435773/
https://www.ncbi.nlm.nih.gov/pubmed/16549014
http://dx.doi.org/10.1186/1471-2105-7-159
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author Muro, Enrique M
Perez-Iratxeta, Carolina
Andrade-Navarro, Miguel A
author_facet Muro, Enrique M
Perez-Iratxeta, Carolina
Andrade-Navarro, Miguel A
author_sort Muro, Enrique M
collection PubMed
description BACKGROUND: The annotations of Affymetrix DNA microarray probe sets with Gene Ontology terms are carefully selected for correctness. This results in very accurate but incomplete annotations which is not always desirable for microarray experiment evaluation. RESULTS: Here we present a protocol to amplify the set of Gene Ontology annotations associated to Affymetrix DNA microarray probe sets using information from related databases. CONCLUSION: Predicted novel annotations and the evidence producing them can be accessed at Probe2GO: . Scripts are available on demand.
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spelling pubmed-14357732006-04-13 Amplification of the Gene Ontology annotation of Affymetrix probe sets Muro, Enrique M Perez-Iratxeta, Carolina Andrade-Navarro, Miguel A BMC Bioinformatics Methodology Article BACKGROUND: The annotations of Affymetrix DNA microarray probe sets with Gene Ontology terms are carefully selected for correctness. This results in very accurate but incomplete annotations which is not always desirable for microarray experiment evaluation. RESULTS: Here we present a protocol to amplify the set of Gene Ontology annotations associated to Affymetrix DNA microarray probe sets using information from related databases. CONCLUSION: Predicted novel annotations and the evidence producing them can be accessed at Probe2GO: . Scripts are available on demand. BioMed Central 2006-03-20 /pmc/articles/PMC1435773/ /pubmed/16549014 http://dx.doi.org/10.1186/1471-2105-7-159 Text en Copyright © 2006 Muro et al; licensee BioMed Central Ltd.
spellingShingle Methodology Article
Muro, Enrique M
Perez-Iratxeta, Carolina
Andrade-Navarro, Miguel A
Amplification of the Gene Ontology annotation of Affymetrix probe sets
title Amplification of the Gene Ontology annotation of Affymetrix probe sets
title_full Amplification of the Gene Ontology annotation of Affymetrix probe sets
title_fullStr Amplification of the Gene Ontology annotation of Affymetrix probe sets
title_full_unstemmed Amplification of the Gene Ontology annotation of Affymetrix probe sets
title_short Amplification of the Gene Ontology annotation of Affymetrix probe sets
title_sort amplification of the gene ontology annotation of affymetrix probe sets
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1435773/
https://www.ncbi.nlm.nih.gov/pubmed/16549014
http://dx.doi.org/10.1186/1471-2105-7-159
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