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The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three gen...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450336/ https://www.ncbi.nlm.nih.gov/pubmed/16648359 http://dx.doi.org/10.1093/nar/gkl174 |
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author | Hiroki, Tomoko Song, Young-Han Liebhaber, Stephen A. Cooke, Nancy E. |
author_facet | Hiroki, Tomoko Song, Young-Han Liebhaber, Stephen A. Cooke, Nancy E. |
author_sort | Hiroki, Tomoko |
collection | PubMed |
description | The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three genes by 1.5 Mb argues that hDBP may be under autonomous control. To test for hDBP autonomy, mouse lines were generated with a transgene containing the hDBP gene along with extensive flanking sequences. Expression of this transgene was hepatic, robust and proportional to transgene copy number. DNase I hypersensitive site (HS) mapping revealed five liver-specific HS at the hDBP locus: HSI and HSIII at −2.1 kb and −0.13 kb upstream of the transcription initiation site, HSIV and HSV within intron 1 and HSVII located 3′ to the poly(A) site. A second transgene with minimal flanking sequences confirmed the sufficiency of these gene-proximal determinants for hepatic activation. The hepatic-specific HS aligned with segments of phylogenetically conserved non-coding sequences. These data demonstrate the autonomy of the hDBP locus and suggest that this control is mediated by chromatin-based locus control determinants in close proximity to, and within the transcription unit. |
format | Text |
id | pubmed-1450336 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-14503362006-05-12 The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin Hiroki, Tomoko Song, Young-Han Liebhaber, Stephen A. Cooke, Nancy E. Nucleic Acids Res Article The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three genes by 1.5 Mb argues that hDBP may be under autonomous control. To test for hDBP autonomy, mouse lines were generated with a transgene containing the hDBP gene along with extensive flanking sequences. Expression of this transgene was hepatic, robust and proportional to transgene copy number. DNase I hypersensitive site (HS) mapping revealed five liver-specific HS at the hDBP locus: HSI and HSIII at −2.1 kb and −0.13 kb upstream of the transcription initiation site, HSIV and HSV within intron 1 and HSVII located 3′ to the poly(A) site. A second transgene with minimal flanking sequences confirmed the sufficiency of these gene-proximal determinants for hepatic activation. The hepatic-specific HS aligned with segments of phylogenetically conserved non-coding sequences. These data demonstrate the autonomy of the hDBP locus and suggest that this control is mediated by chromatin-based locus control determinants in close proximity to, and within the transcription unit. Oxford University Press 2006 2006-04-28 /pmc/articles/PMC1450336/ /pubmed/16648359 http://dx.doi.org/10.1093/nar/gkl174 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Hiroki, Tomoko Song, Young-Han Liebhaber, Stephen A. Cooke, Nancy E. The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title | The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title_full | The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title_fullStr | The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title_full_unstemmed | The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title_short | The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
title_sort | human vitamin d-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450336/ https://www.ncbi.nlm.nih.gov/pubmed/16648359 http://dx.doi.org/10.1093/nar/gkl174 |
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