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The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin

The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three gen...

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Autores principales: Hiroki, Tomoko, Song, Young-Han, Liebhaber, Stephen A., Cooke, Nancy E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450336/
https://www.ncbi.nlm.nih.gov/pubmed/16648359
http://dx.doi.org/10.1093/nar/gkl174
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author Hiroki, Tomoko
Song, Young-Han
Liebhaber, Stephen A.
Cooke, Nancy E.
author_facet Hiroki, Tomoko
Song, Young-Han
Liebhaber, Stephen A.
Cooke, Nancy E.
author_sort Hiroki, Tomoko
collection PubMed
description The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three genes by 1.5 Mb argues that hDBP may be under autonomous control. To test for hDBP autonomy, mouse lines were generated with a transgene containing the hDBP gene along with extensive flanking sequences. Expression of this transgene was hepatic, robust and proportional to transgene copy number. DNase I hypersensitive site (HS) mapping revealed five liver-specific HS at the hDBP locus: HSI and HSIII at −2.1 kb and −0.13 kb upstream of the transcription initiation site, HSIV and HSV within intron 1 and HSVII located 3′ to the poly(A) site. A second transgene with minimal flanking sequences confirmed the sufficiency of these gene-proximal determinants for hepatic activation. The hepatic-specific HS aligned with segments of phylogenetically conserved non-coding sequences. These data demonstrate the autonomy of the hDBP locus and suggest that this control is mediated by chromatin-based locus control determinants in close proximity to, and within the transcription unit.
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spelling pubmed-14503362006-05-12 The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin Hiroki, Tomoko Song, Young-Han Liebhaber, Stephen A. Cooke, Nancy E. Nucleic Acids Res Article The human vitamin D-binding protein (hDBP) gene is a member of a cluster that includes albumin, α-fetoprotein and α-albumin genes. The common origin, physical linkage and hepatic expression of these four genes predict shared regulatory element(s). However, separation of hDBP from the other three genes by 1.5 Mb argues that hDBP may be under autonomous control. To test for hDBP autonomy, mouse lines were generated with a transgene containing the hDBP gene along with extensive flanking sequences. Expression of this transgene was hepatic, robust and proportional to transgene copy number. DNase I hypersensitive site (HS) mapping revealed five liver-specific HS at the hDBP locus: HSI and HSIII at −2.1 kb and −0.13 kb upstream of the transcription initiation site, HSIV and HSV within intron 1 and HSVII located 3′ to the poly(A) site. A second transgene with minimal flanking sequences confirmed the sufficiency of these gene-proximal determinants for hepatic activation. The hepatic-specific HS aligned with segments of phylogenetically conserved non-coding sequences. These data demonstrate the autonomy of the hDBP locus and suggest that this control is mediated by chromatin-based locus control determinants in close proximity to, and within the transcription unit. Oxford University Press 2006 2006-04-28 /pmc/articles/PMC1450336/ /pubmed/16648359 http://dx.doi.org/10.1093/nar/gkl174 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Hiroki, Tomoko
Song, Young-Han
Liebhaber, Stephen A.
Cooke, Nancy E.
The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title_full The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title_fullStr The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title_full_unstemmed The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title_short The human vitamin D-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
title_sort human vitamin d-binding protein gene contains locus control determinants sufficient for autonomous activation in hepatic chromatin
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450336/
https://www.ncbi.nlm.nih.gov/pubmed/16648359
http://dx.doi.org/10.1093/nar/gkl174
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