Cargando…

Primer Extension Enrichment Reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens

Mostrar otras versiones (1)

We developed a conceptually new subtraction strategy for the detection and isolation of target DNA and/or RNA from complex nucleic acid mixtures, called Primer Extension Enrichment Reaction (PEER). PEER uses adapters and class IIS restriction enzymes to generate tagged oligonucleotides from dsDNA fr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ganova-Raeva, Lilia, Zhang, Xinjian, Cao, Fengli, Fields, Howard, Khudyakov, Yury
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2006
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1484250/ https://www.ncbi.nlm.nih.gov/pubmed/16790564 http://dx.doi.org/10.1093/nar/gkl391

Ejemplares similares

Primer extension enrichment reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens
por: Ganova-Raeva, Lilia, et al.
Publicado: (2007)

Surface plasmon field-enhanced fluorescence spectroscopy studies of primer extension reactions
por: Stengel, Gudrun, et al.
Publicado: (2005)

Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction
por: Wu, Jer-Horng, et al.
Publicado: (2007)

Deep sequencing of non-enzymatic RNA primer extension
por: Duzdevich, Daniel, et al.
Publicado: (2020)

Identifying the targets of aminoacyl-tRNA synthetase inhibitors by primer extension inhibition
por: Orelle, Cédric, et al.
Publicado: (2013)

Multiple primer extension by DNA polymerase on a novel plastic DNA array coated with a biocompatible polymer
por: Kinoshita, Kenji, et al.
Publicado: (2007)

Competitive enzymatic reaction to control allele-specific extensions
por: Hultin, Emilie, et al.
Publicado: (2005)

Extensive chromatin fragmentation improves enrichment of protein binding sites in chromatin immunoprecipitation experiments
por: Fan, Xiaochun, et al.
Publicado: (2008)

High-throughput alternative splicing quantification by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
por: McCullough, Ron M., et al.
Publicado: (2005)

A novel transcriptome subtraction method for the detection of differentially expressed genes in highly complex eukaryotes
por: Li, L., et al.
Publicado: (2005)

Primer3—new capabilities and interfaces
por: Untergasser, Andreas, et al.
Publicado: (2012)

Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells
por: Mrázek, Jan, et al.
Publicado: (2007)

A thermodynamic approach to PCR primer design
por: Mann, Tobias, et al.
Publicado: (2009)

Optimization of turn-back primers in isothermal amplification
por: Kimura, Yasumasa, et al.
Publicado: (2011)

Exquisite allele discrimination by toehold hairpin primers
por: Byrom, Michelle, et al.
Publicado: (2014)

Dissecting and tuning primer editing by proofreading polymerases
por: Gohl, Daryl M, et al.
Publicado: (2021)

A nuclease-polymerase chain reaction enables amplification of probes used for capture-based DNA target enrichment
por: Leong, Ka Wai, et al.
Publicado: (2019)

Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes
por: Bae, Jin-Woo, et al.
Publicado: (2005)

Evaluation of Intra-Host Variants of the Entire Hepatitis B Virus Genome
por: Ramachandran, Sumathi, et al.
Publicado: (2011)

Homolog-specific PCR primer design for profiling splice variants
por: Srivastava, Gyan Prakash, et al.
Publicado: (2011)

Absolute enrichment: gene set enrichment analysis for homeostatic systems
por: Saxena, Vishal, et al.
Publicado: (2006)

Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction
por: Xu, Xiaojun, et al.
Publicado: (2016)

UniPrime: a workflow-based platform for improved universal primer design
por: Bekaert, Michaël, et al.
Publicado: (2008)

BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes
por: Tusnády, Gábor E., et al.
Publicado: (2005)

ChIP-Enrich: gene set enrichment testing for ChIP-seq data
por: Welch, Ryan P., et al.
Publicado: (2014)

Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers
por: Levin, Joshua D., et al.
Publicado: (2006)

Sensitive isothermal detection of nucleic-acid sequence by primer generation–rolling circle amplification
por: Murakami, Taku, et al.
Publicado: (2009)

EASI—enrichment of alternatively spliced isoforms
por: Venables, Julian P., et al.
Publicado: (2006)

Microfluidic droplet enrichment for targeted sequencing
por: Eastburn, Dennis J., et al.
Publicado: (2015)

Hot Start PCR with heat-activatable primers: a novel approach for improved PCR performance
por: Lebedev, Alexandre V., et al.
Publicado: (2008)

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
por: Riaz, Tiayyba, et al.
Publicado: (2011)

Zip Nucleic Acids: new high affinity oligonucleotides as potent primers for PCR and reverse transcription
por: Moreau, Valérie, et al.
Publicado: (2009)

A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil
por: Gans, Jason D., et al.
Publicado: (2012)

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
por: Liang, Richard H., et al.
Publicado: (2014)

MRPrimer: a MapReduce-based method for the thorough design of valid and ranked primers for PCR
por: Kim, Hyerin, et al.
Publicado: (2015)

Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations
por: Lund, Eivind, et al.
Publicado: (2014)

Sensitive RNA detection by combining three-way junction formation and primer generation-rolling circle amplification
por: Murakami, Taku, et al.
Publicado: (2012)

Twin-primer non-enzymatic DNA assembly: an efficient and accurate multi-part DNA assembly method
por: Liang, Jing, et al.
Publicado: (2017)

Convergence and coevolution of Hepatitis B virus drug resistance
por: Thai, Hong, et al.
Publicado: (2012)

Complex genetic encoding of the hepatitis B virus on-drug persistence
por: Thai, Hong, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_qhfcjofaut53lciv381j6vmfc5