Cargando…

Evaluation of microarray data normalization procedures using spike-in experiments

BACKGROUND: Recently, a large number of methods for the analysis of microarray data have been proposed but there are few comparisons of their relative performances. By using so-called spike-in experiments, it is possible to characterize the analyzed data and thereby enable comparisons of different a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rydén, Patrik, Andersson, Henrik, Landfors, Mattias, Näslund, Linda, Hartmanová, Blanka, Noppa, Laila, Sjöstedt, Anders
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1526761/ https://www.ncbi.nlm.nih.gov/pubmed/16774679 http://dx.doi.org/10.1186/1471-2105-7-300

Ejemplares similares

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
por: Önskog, Jenny, et al.
Publicado: (2011)

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
por: Freyhult, Eva, et al.
Publicado: (2010)

Normalization of High Dimensional Genomics Data Where the Distribution of the Altered Variables Is Skewed
por: Landfors, Mattias, et al.
Publicado: (2011)

The type IV pilin, PilA, is required for full virulence of Francisella tularensis subspecies tularensis
por: Forslund, Anna-Lena, et al.
Publicado: (2010)

Effects of climate change on tularaemia disease activity in Sweden
por: Rydén, Patrik, et al.
Publicado: (2009)

Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma
por: Andersson-Evelönn, Emma, et al.
Publicado: (2020)

Pr is a member of a restricted class of σ(70)-dependent promoters that lack a recognizable −10 element
por: del Peso-Santos, Teresa, et al.
Publicado: (2012)

Vaccine-Mediated Mechanisms Controlling Replication of Francisella tularensis in Human Peripheral Blood Mononuclear Cells Using a Co-culture System
por: Eneslätt, Kjell, et al.
Publicado: (2018)

Epidemiology and Ecology of Tularemia in Sweden, 1984–2012
por: Desvars, Amélie, et al.
Publicado: (2015)

Molecular Immune Responses to Aerosol Challenge with Francisella tularensis in Mice Inoculated with Live Vaccine Candidates of Varying Efficacy
por: Shen, Hua, et al.
Publicado: (2010)

Vaccine-Mediated Mechanisms Controlling Francisella tularensis SCHU S4 Growth in a Rat Co-Culture System
por: Lindgren, Helena, et al.
Publicado: (2020)

Image Analysis and Data Normalization Procedures are Crucial for Microarray Analyses
por: Kadanga, Ali Kpatcha, et al.
Publicado: (2008)

Normalization for triple-target microarray experiments
por: Martin-Magniette, Marie-Laure, et al.
Publicado: (2008)

Models Derived from In Vitro Analyses of Spleen, Liver, and Lung Leukocyte Functions Predict Vaccine Efficacy against the Francisella tularensis Live Vaccine Strain (LVS)
por: De Pascalis, Roberto, et al.
Publicado: (2014)

Outbreaks of Tularemia in a Boreal Forest Region Depends on Mosquito Prevalence
por: Rydén, Patrik, et al.
Publicado: (2012)

DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma
por: Evelönn, Emma Andersson, et al.
Publicado: (2019)

Immortalization of T-Cells Is Accompanied by Gradual Changes in CpG Methylation Resulting in a Profile Resembling a Subset of T-Cell Leukemias()()()
por: Degerman, Sofie, et al.
Publicado: (2014)

A new non-linear normalization method for reducing variability in DNA microarray experiments
por: Workman, Christopher, et al.
Publicado: (2002)

Elongator Complex Influences Telomeric Gene Silencing and DNA Damage Response by Its Role in Wobble Uridine tRNA Modification
por: Chen, Changchun, et al.
Publicado: (2011)

Lipoprotein size is a main determinant for the rate of hydrolysis by exogenous LPL in human plasma
por: Kovrov, Oleg, et al.
Publicado: (2021)

Supervised normalization of microarrays
por: Mecham, Brigham H., et al.
Publicado: (2010)

Leukotriene A4 Hydrolase and Hepatocyte Growth Factor Are Risk Factors of Sudden Cardiac Death Due to First-Ever Myocardial Infarction
por: Landfors, Fredrik, et al.
Publicado: (2022)

Consolidated strategy for the analysis of microarray spike-in data
por: McCall, Matthew N., et al.
Publicado: (2008)

Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls
por: Hill, Andrew A, et al.
Publicado: (2001)

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile
por: Fardin, Paolo, et al.
Publicado: (2007)

Evaluation of Different Normalization and Analysis Procedures for Illumina Gene Expression Microarray Data Involving Small Changes
por: Johnstone, Daniel M., et al.
Publicado: (2013)

Iterative rank-order normalization of gene expression microarray data
por: Welsh, Eric A, et al.
Publicado: (2013)

Optimized LOWESS normalization parameter selection for DNA microarray data
por: Berger, John A, et al.
Publicado: (2004)

Weighted analysis of general microarray experiments
por: Sjögren, Anders, et al.
Publicado: (2007)

Production of Tissue Microarrays, Immunohistochemistry Staining and Digitalization Within the Human Protein Atlas
por: Kampf, Caroline, et al.
Publicado: (2012)

A Normalized Tree Index for identification of correlated clinical parameters in microarray experiments
por: Martin, Christian W, et al.
Publicado: (2011)

Lipolysis defect in people with obesity who undergo metabolic surgery
por: Rydén, Mikael, et al.
Publicado: (2022)

Normalization Benefits Microarray-Based Classification
por: Hua, Jianping, et al.
Publicado: (2006)

Evaluation of normalization methods for microarray data
por: Park, Taesung, et al.
Publicado: (2003)

Cycles of light and dark co-ordinate reversible colony differentiation in Listeria monocytogenes
por: Tiensuu, Teresa, et al.
Publicado: (2013)

TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays
por: Bengtsson, Henrik, et al.
Publicado: (2010)

An improved procedure for gene selection from microarray experiments using false discovery rate criterion
por: Yang, James J, et al.
Publicado: (2006)

Cluster analysis on high dimensional RNA-seq data with applications to cancer research - An evaluation study
por: Vidman, Linda, et al.
Publicado: (2019)

Comparison of Methods for Feature Selection in Clustering of High-Dimensional RNA-Sequencing Data to Identify Cancer Subtypes
por: Källberg, David, et al.
Publicado: (2021)

Evaluating different methods of microarray data normalization
por: Fujita, André, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_4kbouu5ju6shufjkqocbnhmedm