Cargando…

Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks

BACKGROUND: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to calculate the distance between the resulting values of each measure. Conventional phylogenetic analysis based on genomic s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Oh, S June, Joung, Je-Gun, Chang, Jeong-Ho, Zhang, Byoung-Tak
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1534063/ https://www.ncbi.nlm.nih.gov/pubmed/16753070 http://dx.doi.org/10.1186/1471-2105-7-284

Ejemplares similares

Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis
por: Rhee, Je-Keun, et al.
Publicado: (2009)

Inferring biological networks with output kernel trees
por: Geurts, Pierre, et al.
Publicado: (2007)

Biochemical and phylogenetic networks-II: X-trees and phylogenetic trees
por: Rajan, R. Sundara, et al.
Publicado: (2021)

Constructing phylogenetic trees using interacting pathways
por: Wan, Peng, et al.
Publicado: (2013)

Construction of Condition-Specific Gene Regulatory Network Using Kernel Canonical Correlation Analysis
por: Jeong, Dabin, et al.
Publicado: (2021)

ENJ algorithm can construct triple phylogenetic trees
por: Hong, Yan, et al.
Publicado: (2020)

Phylogenetic tree construction using trinucleotide usage profile (TUP)
por: Chen, Si, et al.
Publicado: (2016)

Tanglegrams for rooted phylogenetic trees and networks
por: Scornavacca, Celine, et al.
Publicado: (2011)

Folding and unfolding phylogenetic trees and networks
por: Huber, Katharina T., et al.
Publicado: (2016)

Tree-Based Unrooted Phylogenetic Networks
por: Francis, A., et al.
Publicado: (2017)

On the construction of useful quantum kernels
por: Incudini, Massimiliano
Publicado: (2023)

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
por: Lee, Tae-Ho, et al.
Publicado: (2014)

A probabilistic coevolutionary biclustering algorithm for discovering coherent patterns in gene expression dataset
por: Joung, Je-Gun, et al.
Publicado: (2012)

Using tree diversity to compare phylogenetic heuristics
por: Sul, Seung-Jin, et al.
Publicado: (2009)

Bacterial phylogenetic tree construction based on genomic translation stop signals
por: Xu, Lijing, et al.
Publicado: (2012)

IcyTree: rapid browser-based visualization for phylogenetic trees and networks
por: Vaughan, Timothy G
Publicado: (2017)

Generation of Binary Tree-Child phylogenetic networks
por: Cardona, Gabriel, et al.
Publicado: (2019)

A novel approach to phylogenetic tree construction using stochastic optimization and clustering
por: Qin, Ling, et al.
Publicado: (2006)

Do Triplets Have Enough Information to Construct the Multi-Labeled Phylogenetic Tree?
por: Hassanzadeh, Reza, et al.
Publicado: (2014)

Comparing the rates of speciation and extinction between phylogenetic trees
por: Revell, Liam J.
Publicado: (2018)

Drawing explicit phylogenetic networks and their integration into SplitsTree
por: Kloepper, Tobias H, et al.
Publicado: (2008)

Which Phylogenetic Networks are Merely Trees with Additional Arcs?
por: Francis, Andrew R., et al.
Publicado: (2015)

Correction: Generation of Binary Tree-Child phylogenetic networks
por: Cardona, Gabriel, et al.
Publicado: (2019)

Metabolic network prediction through pairwise rational kernels
por: Roche-Lima, Abiel, et al.
Publicado: (2014)

LifePrint: a novel k-tuple distance method for construction of phylogenetic trees
por: Reyes-Prieto, Fabián, et al.
Publicado: (2011)

Phylogenetic Trees and Networks Reduce to Phylogenies on Binary States: Does It Furnish an Explanation to the Robustness of Phylogenetic Trees against Lateral Transfers
por: Thuillard, Marc, et al.
Publicado: (2015)

Constructing Phylogenetic Networks Based on the Isomorphism of Datasets
por: Wang, Juan, et al.
Publicado: (2016)

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
por: Llorens, Carlos, et al.
Publicado: (2009)

Inference of Transmission Network Structure from HIV Phylogenetic Trees
por: Giardina, Federica, et al.
Publicado: (2017)

Embedding gene trees into phylogenetic networks by conflict resolution algorithms
por: Wawerka, Marcin, et al.
Publicado: (2022)

Metabolite identification through multiple kernel learning on fragmentation trees
por: Shen, Huibin, et al.
Publicado: (2014)

Support Vector Machine with Ensemble Tree Kernel for Relation Extraction
por: Liu, Xiaoyong, et al.
Publicado: (2016)

Cryptic Epoxytiglianes from the Kernels of the Blushwood Tree (Fontainea picrosperma)
por: Chianese, Giuseppina, et al.
Publicado: (2022)

Construction of microRNA functional families by a mixture model of position weight matrices
por: Rhee, Je-Keun, et al.
Publicado: (2013)

SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction
por: Hagopian, Raffi, et al.
Publicado: (2010)

Construction of a Phylogenetic Tree of Photosynthetic Prokaryotes Based on Average Similarities of Whole Genome Sequences
por: Satoh, Soichirou, et al.
Publicado: (2013)

PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data
por: Pinheiro, Diogo, et al.
Publicado: (2022)

Unrealistic phylogenetic trees may improve phylogenetic footprinting
por: Nettling, Martin, et al.
Publicado: (2017)

TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes
por: Carpenter, Charlie M., et al.
Publicado: (2023)

A Survey of Methods for Constructing Rooted Phylogenetic Networks
por: Wang, Juan
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_hhp694ink7qbn97tdoab9kd4j6