Cargando…

Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties

BACKGROUND: The number of protein sequences deriving from genome sequencing projects is outpacing our knowledge about the function of these proteins. With the gap between experimentally characterized and uncharacterized proteins continuing to widen, it is necessary to develop new computational metho...

Descripción completa

Detalles Bibliográficos
Autores principales:	Petrova, Natalia V, Wu, Cathy H
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1534064/ https://www.ncbi.nlm.nih.gov/pubmed/16790052 http://dx.doi.org/10.1186/1471-2105-7-312

Ejemplares similares

Predictions of Hot Spot Residues at Protein-Protein Interfaces Using Support Vector Machines
por: Lise, Stefano, et al.
Publicado: (2011)

Support Vector Machines for predicting protein structural class
por: Cai, Yu-Dong, et al.
Publicado: (2001)

Protein structure based prediction of catalytic residues
por: Fajardo, J Eduardo, et al.
Publicado: (2013)

Prediction of protein-protein binding site by using core interface residue and support vector machine
por: Li, Nan, et al.
Publicado: (2008)

Automatic prediction of catalytic residues by modeling residue structural neighborhood
por: Cilia, Elisa, et al.
Publicado: (2010)

Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach
por: Cai, C. Z., et al.
Publicado: (2006)

Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
por: Someya, Seizi, et al.
Publicado: (2010)

Using Support Vector Machine and Evolutionary Profiles to Predict Antifreeze Protein Sequences
por: Zhao, Xiaowei, et al.
Publicado: (2012)

Predicting Protein Model Quality from Sequence Alignments by Support Vector Machines
por: Deng, Xin, et al.
Publicado: (2013)

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only
por: Song, Jiangning, et al.
Publicado: (2009)

Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure
por: Sheng, Ying, et al.
Publicado: (2007)

Improved residue contact prediction using support vector machines and a large feature set
por: Cheng, Jianlin, et al.
Publicado: (2007)

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach
por: Lin, HH, et al.
Publicado: (2006)

BLProt: prediction of bioluminescent proteins based on support vector machine and relieff feature selection
por: Kandaswamy, Krishna Kumar, et al.
Publicado: (2011)

Prediction of Functional Class of Proteins and Peptides Irrespective of Sequence Homology by Support Vector Machines
por: Tang, Zhi Qun, et al.
Publicado: (2009)

Predicting residue-wise contact orders in proteins by support vector regression
por: Song, Jiangning, et al.
Publicado: (2006)

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines
por: Cao, Renzhi, et al.
Publicado: (2014)

Prediction of backbone dihedral angles and protein secondary structure using support vector machines
por: Kountouris, Petros, et al.
Publicado: (2009)

Prediction of protein binding sites in protein structures using hidden Markov support vector machine
por: Liu, Bin, et al.
Publicado: (2009)

Transmembrane protein topology prediction using support vector machines
por: Nugent, Timothy, et al.
Publicado: (2009)

Prediction of Protein Essentiality by the Support Vector Machine with Statistical Tests
por: Hor, Chiou-Yi, et al.
Publicado: (2013)

Prediction of Human Intestinal Absorption by GA Feature Selection and Support Vector Machine Regression
por: Yan, Aixia, et al.
Publicado: (2008)

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences
por: Guo, Yanzhi, et al.
Publicado: (2008)

Prediction of Protein–Protein Interaction with Pairwise Kernel Support Vector Machine
por: Zhang, Shao-Wu, et al.
Publicado: (2014)

Support Vector Machines
por: Deng, Naiyang
Publicado: (2012)

Support vector machines
por: Steinwart, Ingo, et al.
Publicado: (2008)

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine
por: Manavalan, Balachandran, et al.
Publicado: (2018)

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine
por: Meng, Jun, et al.
Publicado: (2014)

Prediction of Cell Penetrating Peptides by Support Vector Machines
por: Sanders, William S., et al.
Publicado: (2011)

Identification of DNA-Binding Proteins Using Support Vector Machine with Sequence Information
por: Ma, Xin, et al.
Publicado: (2013)

Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines
por: González, Alvaro J, et al.
Publicado: (2010)

Predicting primary progressive aphasias with support vector machine approaches in structural MRI data
por: Bisenius, Sandrine, et al.
Publicado: (2017)

A prediction model for oral bioavailability of drugs using physicochemical properties by support vector machine
por: Kumar, Rajnish, et al.
Publicado: (2011)

Protein local 3D structure prediction by Super Granule Support Vector Machines (Super GSVM)
por: Chen, Bernard, et al.
Publicado: (2009)

Identification of Antifreeze Proteins and Their Functional Residues by Support Vector Machine and Genetic Algorithms based on n-Peptide Compositions
por: Yu, Chin-Sheng, et al.
Publicado: (2011)

The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines
por: Vlahoviček, Kristian, et al.
Publicado: (2005)

On the Structural Context and Identification of Enzyme Catalytic Residues
por: Chien, Yu-Tung, et al.
Publicado: (2013)

Accurate Prediction of Protein Catalytic Residues by Side Chain Orientation and Residue Contact Density
por: Chien, Yu-Tung, et al.
Publicado: (2012)

Catalytic residues and a predicted structure of tetrahydrobiopterin-dependent alkylglycerol mono-oxygenase
por: Watschinger, Katrin, et al.
Publicado: (2012)

Understanding support vector machines
por: Géron, Aurélien
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_5r5acmp0b1ulc3tcd3ilh7g5v5