metaSHARK: a WWW platform for interactive exploration of metabolic networks

The metaSHARK (metabolic search and reconstruction kit) web server offers users an intuitive, fully interactive way to explore the KEGG metabolic network via a WWW browser. Metabolic reconstruction information for specific organisms, produced by our automated SHARKhunt tool or from other programs or...

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Detalles Bibliográficos
Autores principales: Hyland, Christopher, Pinney, John W., McConkey, Glenn A., Westhead, David R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538829/
https://www.ncbi.nlm.nih.gov/pubmed/16845107
http://dx.doi.org/10.1093/nar/gkl196
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author Hyland, Christopher
Pinney, John W.
McConkey, Glenn A.
Westhead, David R.
author_facet Hyland, Christopher
Pinney, John W.
McConkey, Glenn A.
Westhead, David R.
author_sort Hyland, Christopher
collection PubMed
description The metaSHARK (metabolic search and reconstruction kit) web server offers users an intuitive, fully interactive way to explore the KEGG metabolic network via a WWW browser. Metabolic reconstruction information for specific organisms, produced by our automated SHARKhunt tool or from other programs or genome annotations, may be uploaded to the website and overlaid on the generic network. Additional data from gene expression experiments can also be incorporated, allowing the visualization of differential gene expression in the context of the predicted metabolic network. metaSHARK is available at .
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spelling pubmed-15388292006-08-18 metaSHARK: a WWW platform for interactive exploration of metabolic networks Hyland, Christopher Pinney, John W. McConkey, Glenn A. Westhead, David R. Nucleic Acids Res Article The metaSHARK (metabolic search and reconstruction kit) web server offers users an intuitive, fully interactive way to explore the KEGG metabolic network via a WWW browser. Metabolic reconstruction information for specific organisms, produced by our automated SHARKhunt tool or from other programs or genome annotations, may be uploaded to the website and overlaid on the generic network. Additional data from gene expression experiments can also be incorporated, allowing the visualization of differential gene expression in the context of the predicted metabolic network. metaSHARK is available at . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538829/ /pubmed/16845107 http://dx.doi.org/10.1093/nar/gkl196 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Hyland, Christopher
Pinney, John W.
McConkey, Glenn A.
Westhead, David R.
metaSHARK: a WWW platform for interactive exploration of metabolic networks
title metaSHARK: a WWW platform for interactive exploration of metabolic networks
title_full metaSHARK: a WWW platform for interactive exploration of metabolic networks
title_fullStr metaSHARK: a WWW platform for interactive exploration of metabolic networks
title_full_unstemmed metaSHARK: a WWW platform for interactive exploration of metabolic networks
title_short metaSHARK: a WWW platform for interactive exploration of metabolic networks
title_sort metashark: a www platform for interactive exploration of metabolic networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538829/
https://www.ncbi.nlm.nih.gov/pubmed/16845107
http://dx.doi.org/10.1093/nar/gkl196
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AT mcconkeyglenna metasharkawwwplatformforinteractiveexplorationofmetabolicnetworks
AT westheaddavidr metasharkawwwplatformforinteractiveexplorationofmetabolicnetworks

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