Cargando…

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

The annotation efforts of the BIOSAPIENS European Network of Excellence have generated several distributed annotation systems (DAS) with the aim of integrating Bioinformatics resources and annotating metazoan genomes (). In this context, the PONGO DAS server () provides the annotation on predictive...

Descripción completa

Detalles Bibliográficos
Autores principales:	Amico, Mauro, Finelli, Michele, Rossi, Ivan, Zauli, Andrea, Elofsson, Arne, Viklund, Håkan, von Heijne, Gunnar, Jones, David, Krogh, Anders, Fariselli, Piero, Luigi Martelli, Pier, Casadio, Rita
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2006
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538841/ https://www.ncbi.nlm.nih.gov/pubmed/16844984 http://dx.doi.org/10.1093/nar/gkl208

Ejemplares similares

TRAMPLE: the transmembrane protein labelling environment
por: Fariselli, Piero, et al.
Publicado: (2005)

BUSCA: an integrative web server to predict subcellular localization of proteins
por: Savojardo, Castrense, et al.
Publicado: (2018)

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation
por: Capriotti, Emidio, et al.
Publicado: (2013)

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences
por: Piovesan, Damiano, et al.
Publicado: (2011)

How to inherit statistically validated annotation within BAR+ protein clusters
por: Piovesan, Damiano, et al.
Publicado: (2013)

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
por: Fariselli, Piero, et al.
Publicado: (2005)

BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation
por: Baldazzi, Davide, et al.
Publicado: (2021)

Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server
por: Käll, Lukas, et al.
Publicado: (2007)

Donde pongo el logo, pongo la imagen
por: Burguet Cruz, Susana
Publicado: (2007)

DeepREx-WS: A web server for characterising protein–solvent interaction starting from sequence
por: Manfredi, Matteo, et al.
Publicado: (2021)

The Prediction of Membrane Protein Structure and Genome Structural Annotation
por: Martelli, Pier Luigi, et al.
Publicado: (2003)

eSLDB: eukaryotic subcellular localization database
por: Pierleoni, Andea, et al.
Publicado: (2007)

Predicting protein thermostability changes from sequence upon multiple mutations
por: Montanucci, Ludovica, et al.
Publicado: (2008)

Predicting cancer-associated germline variations in proteins
por: Martelli, Pier Luigi, et al.
Publicado: (2012)

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications
por: Fariselli, Piero, et al.
Publicado: (2009)

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations
por: Savojardo, Castrense, et al.
Publicado: (2013)

DeepSig: deep learning improves signal peptide detection in proteins
por: Savojardo, Castrense, et al.
Publicado: (2018)

SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments
por: Savojardo, Castrense, et al.
Publicado: (2017)

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases
por: Di Lena, Pietro, et al.
Publicado: (2015)

TOPCONS: consensus prediction of membrane protein topology
por: Bernsel, Andreas, et al.
Publicado: (2009)

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
por: Tsirigos, Konstantinos D., et al.
Publicado: (2015)

TMFoldWeb: a web server for predicting transmembrane protein fold class
por: Kozma, Dániel, et al.
Publicado: (2015)

MemPype: a pipeline for the annotation of eukaryotic membrane proteins
por: Pierleoni, Andrea, et al.
Publicado: (2011)

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation
por: Piovesan, Damiano, et al.
Publicado: (2013)

Large scale analysis of protein stability in OMIM disease related human protein variants
por: Martelli, Pier Luigi, et al.
Publicado: (2016)

On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions
por: Juritz, Ezequiel, et al.
Publicado: (2012)

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
por: Bigelow, Henry, et al.
Publicado: (2006)

Population Genomic Analysis Reveals a Rich Speciation and Demographic History of Orang-utans (Pongo pygmaeus and Pongo abelii)
por: Ma, Xin, et al.
Publicado: (2013)

Grouping behavior of Sumatran orangutans (Pongo abelii) and Tapanuli orangutans (Pongo tapanuliensis) living in forest with low fruit abundance
por: Roth, Tom S., et al.
Publicado: (2020)

Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions
por: Hayat, Sikander, et al.
Publicado: (2012)

Pcons.net: protein structure prediction meta server
por: Wallner, Björn, et al.
Publicado: (2007)

Orangutans (Pongo pygmaeus) Remember Old Acquaintances
por: Hanazuka, Yuki, et al.
Publicado: (2013)

Long-term deep sedation using Zoletil and haloperidol for the treatment of streptococcal pneumonia in an orangutan (Pongo pygmaeus)
por: MARTELLI, Paolo, et al.
Publicado: (2021)

Orangutans (Pongo pygmaeus) recognize their own past actions
por: Hanazuka, Yuki, et al.
Publicado: (2018)

Experimental evidence for yawn contagion in orangutans (Pongo pygmaeus)
por: van Berlo, Evy, et al.
Publicado: (2020)

transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels
por: Waldispühl, J., et al.
Publicado: (2006)

TMB-Hunt: a web server to screen sequence sets for transmembrane β-barrel proteins
por: Garrow, Andrew G., et al.
Publicado: (2005)

TMSNP: a web server to predict pathogenesis of missense mutations in the transmembrane region of membrane proteins
por: Garcia-Recio, Adrián, et al.
Publicado: (2021)

Formation of Transmembrane Helices In Vivo—Is Hydrophobicity All that Matters?
por: von Heijne, Gunnar
Publicado: (2007)

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
por: Capriotti, Emidio, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_p8lotkvtba4grv5dlaj04ssfh1