botXminer: mining biomedical literature with a new web-based application

This paper outlines botXminer, a publicly available application to search XML-formatted MEDLINE(®) data in a complete, object-relational schema implemented in Oracle(®) XML DB. An advantage offered by botXminer is that it can generate quantitative results with certain queries that are not feasible t...

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Detalles Bibliográficos
Autores principales: Mudunuri, Uma, Stephens, Robert, Bruining, David, Liu, David, Lebeda, Frank J.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538892/
https://www.ncbi.nlm.nih.gov/pubmed/16845112
http://dx.doi.org/10.1093/nar/gkl194
Descripción
Sumario:This paper outlines botXminer, a publicly available application to search XML-formatted MEDLINE(®) data in a complete, object-relational schema implemented in Oracle(®) XML DB. An advantage offered by botXminer is that it can generate quantitative results with certain queries that are not feasible through the Entrez-PubMed(®) interface. After retrieving citations associated with user-supplied search terms, MEDLINE fields (title, abstract, journal, MeSH(®) and chemical) and terms (MeSH qualifiers and descriptors, keywords, author, gene symbol and chemical), these citations are grouped and displayed as tabulated or graphic results. This work represents an extension of previous research for integrating these citations with relational systems. botXminer has a user-friendly, intuitive interface that can be freely accessed at .

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