MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes

Phylogenetic footprinting is a method for the discovery of regulatory elements in a set of homologous regulatory regions, usually collected from multiple species. It does so by identifying the most conserved motifs in those homologous regions. This note describes web software that has been designed...

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Detalles Bibliográficos
Autores principales: Neph, Shane, Tompa, Martin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538893/
https://www.ncbi.nlm.nih.gov/pubmed/16845027
http://dx.doi.org/10.1093/nar/gkl069
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author Neph, Shane
Tompa, Martin
author_facet Neph, Shane
Tompa, Martin
author_sort Neph, Shane
collection PubMed
description Phylogenetic footprinting is a method for the discovery of regulatory elements in a set of homologous regulatory regions, usually collected from multiple species. It does so by identifying the most conserved motifs in those homologous regions. This note describes web software that has been designed specifically for this purpose in prokaryotic genomes, making use of the phylogenetic relationships among the homologous sequences in order to make more accurate predictions. The software is called MicroFootPrinter and is available at .
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spelling pubmed-15388932006-08-18 MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes Neph, Shane Tompa, Martin Nucleic Acids Res Article Phylogenetic footprinting is a method for the discovery of regulatory elements in a set of homologous regulatory regions, usually collected from multiple species. It does so by identifying the most conserved motifs in those homologous regions. This note describes web software that has been designed specifically for this purpose in prokaryotic genomes, making use of the phylogenetic relationships among the homologous sequences in order to make more accurate predictions. The software is called MicroFootPrinter and is available at . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538893/ /pubmed/16845027 http://dx.doi.org/10.1093/nar/gkl069 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Neph, Shane
Tompa, Martin
MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title_full MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title_fullStr MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title_full_unstemmed MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title_short MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
title_sort microfootprinter: a tool for phylogenetic footprinting in prokaryotic genomes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538893/
https://www.ncbi.nlm.nih.gov/pubmed/16845027
http://dx.doi.org/10.1093/nar/gkl069
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