Cargando…

Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems pr...

Descripción completa

Detalles Bibliográficos
Autores principales: Scaria, Vinod, Hariharan, Manoj, Arora, Amit, Maiti, Souvik
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538896/
https://www.ncbi.nlm.nih.gov/pubmed/16845097
http://dx.doi.org/10.1093/nar/gkl299
Descripción
Sumario:G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems prompted us to develop a tool for the identification and analysis of quadruplex-forming nucleotide sequences especially in the RNA. Here we present Quadfinder, an online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. The server is designed to be user-friendly and needs minimal intervention by the user, while providing flexibility of defining the variants of the motif. The server is freely available at URL .