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Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems pr...

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Detalles Bibliográficos
Autores principales: Scaria, Vinod, Hariharan, Manoj, Arora, Amit, Maiti, Souvik
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538896/
https://www.ncbi.nlm.nih.gov/pubmed/16845097
http://dx.doi.org/10.1093/nar/gkl299
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author Scaria, Vinod
Hariharan, Manoj
Arora, Amit
Maiti, Souvik
author_facet Scaria, Vinod
Hariharan, Manoj
Arora, Amit
Maiti, Souvik
author_sort Scaria, Vinod
collection PubMed
description G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems prompted us to develop a tool for the identification and analysis of quadruplex-forming nucleotide sequences especially in the RNA. Here we present Quadfinder, an online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. The server is designed to be user-friendly and needs minimal intervention by the user, while providing flexibility of defining the variants of the motif. The server is freely available at URL .
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spelling pubmed-15388962006-08-18 Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences Scaria, Vinod Hariharan, Manoj Arora, Amit Maiti, Souvik Nucleic Acids Res Article G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems prompted us to develop a tool for the identification and analysis of quadruplex-forming nucleotide sequences especially in the RNA. Here we present Quadfinder, an online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. The server is designed to be user-friendly and needs minimal intervention by the user, while providing flexibility of defining the variants of the motif. The server is freely available at URL . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538896/ /pubmed/16845097 http://dx.doi.org/10.1093/nar/gkl299 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Scaria, Vinod
Hariharan, Manoj
Arora, Amit
Maiti, Souvik
Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title_full Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title_fullStr Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title_full_unstemmed Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title_short Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
title_sort quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538896/
https://www.ncbi.nlm.nih.gov/pubmed/16845097
http://dx.doi.org/10.1093/nar/gkl299
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