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Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems pr...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538896/ https://www.ncbi.nlm.nih.gov/pubmed/16845097 http://dx.doi.org/10.1093/nar/gkl299 |
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author | Scaria, Vinod Hariharan, Manoj Arora, Amit Maiti, Souvik |
author_facet | Scaria, Vinod Hariharan, Manoj Arora, Amit Maiti, Souvik |
author_sort | Scaria, Vinod |
collection | PubMed |
description | G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems prompted us to develop a tool for the identification and analysis of quadruplex-forming nucleotide sequences especially in the RNA. Here we present Quadfinder, an online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. The server is designed to be user-friendly and needs minimal intervention by the user, while providing flexibility of defining the variants of the motif. The server is freely available at URL . |
format | Text |
id | pubmed-1538896 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-15388962006-08-18 Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences Scaria, Vinod Hariharan, Manoj Arora, Amit Maiti, Souvik Nucleic Acids Res Article G-quadruplex secondary structures, which play a structural role in repetitive DNA such as telomeres, may also play a functional role at other genomic locations as targetable regulatory elements which control gene expression. The recent interest in application of quadruplexes in biological systems prompted us to develop a tool for the identification and analysis of quadruplex-forming nucleotide sequences especially in the RNA. Here we present Quadfinder, an online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. The server is designed to be user-friendly and needs minimal intervention by the user, while providing flexibility of defining the variants of the motif. The server is freely available at URL . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538896/ /pubmed/16845097 http://dx.doi.org/10.1093/nar/gkl299 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Scaria, Vinod Hariharan, Manoj Arora, Amit Maiti, Souvik Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title | Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title_full | Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title_fullStr | Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title_full_unstemmed | Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title_short | Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
title_sort | quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538896/ https://www.ncbi.nlm.nih.gov/pubmed/16845097 http://dx.doi.org/10.1093/nar/gkl299 |
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