Cargando…

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis

CARMAweb (Comprehensive R-based Microarray Analysis web service) is a web application designed for the analysis of microarray data. CARMAweb performs data preprocessing (background correction, quality control and normalization), detection of differentially expressed genes, cluster analysis, dimensio...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rainer, Johannes, Sanchez-Cabo, Fatima, Stocker, Gernot, Sturn, Alexander, Trajanoski, Zlatko
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2006
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538903/ https://www.ncbi.nlm.nih.gov/pubmed/16845058 http://dx.doi.org/10.1093/nar/gkl038

Ejemplares similares

MARS: Microarray analysis, retrieval, and storage system
por: Maurer, Michael, et al.
Publicado: (2005)

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways
por: Mlecnik, Bernhard, et al.
Publicado: (2005)

A quantization method based on threshold optimization for microarray short time series
por: Di Camillo, Barbara, et al.
Publicado: (2005)

stam – a Bioconductor compliant R package for structured analysis of microarray data
por: Lottaz, Claudio, et al.
Publicado: (2005)

Statistics and data analysis for microarrays using R and bioconductor
por: Drăghici, Sorin
Publicado: (2012)

Statistics and Data Analysis for Microarrays Using R and Bioconductor
por: Draghici, Sorin
Publicado: (2016)

SIMPLEX: Cloud-Enabled Pipeline for the Comprehensive Analysis of Exome Sequencing Data
por: Fischer, Maria, et al.
Publicado: (2012)

PAA: an R/bioconductor package for biomarker discovery with protein microarrays
por: Turewicz, Michael, et al.
Publicado: (2016)

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
por: Hartler, Jürgen, et al.
Publicado: (2007)

Microarray data mining using Bioconductor packages
por: Nie, Haisheng, et al.
Publicado: (2009)

puma: a Bioconductor package for propagating uncertainty in microarray analysis
por: Pearson, Richard D, et al.
Publicado: (2009)

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases
por: Schweiger, Dominik, et al.
Publicado: (2014)

SeqBench: Integrated solution for the management and analysis of exome sequencing data
por: Dander, Andreas, et al.
Publicado: (2014)

Molecular processes during fat cell development revealed by gene expression profiling and functional annotation
por: Hackl, Hubert, et al.
Publicado: (2005)

Microarray Я US: a user-friendly graphical interface to Bioconductor tools that enables accurate microarray data analysis and expedites comprehensive functional analysis of microarray results
por: Dai, Yilin, et al.
Publicado: (2012)

EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations
por: Gu, Zuguang, et al.
Publicado: (2018)

Mulcom: a multiple comparison statistical test for microarray data in Bioconductor
por: Isella, Claudio, et al.
Publicado: (2011)

virtualArray: a R/bioconductor package to merge raw data from different microarray platforms
por: Heider, Andreas, et al.
Publicado: (2013)

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
por: Chu, Vu T, et al.
Publicado: (2008)

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data
por: Kauffmann, Audrey, et al.
Publicado: (2009)

GOLD.db: genomics of lipid-associated disorders database
por: Hackl, Hubert, et al.
Publicado: (2004)

Importing ArrayExpress datasets into R/Bioconductor
por: Kauffmann, Audrey, et al.
Publicado: (2009)

R and Bioconductor solutions for alternative splicing detection
por: Phang, Tzulip
Publicado: (2009)

Visualization of proteomics data using R and Bioconductor
por: Gatto, Laurent, et al.
Publicado: (2015)

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data
por: Glez-Peña, Daniel, et al.
Publicado: (2009)

affyPara—a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data
por: Schmidberger, Markus, et al.
Publicado: (2009)

Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor
por: Okoniewski, Michał J, et al.
Publicado: (2008)

Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction
por: Mlecnik, Bernhard, et al.
Publicado: (2010)

Unlocking the potential of publicly available microarray data using inSilicoDb and inSilicoMerging R/Bioconductor packages
por: Taminau, Jonatan, et al.
Publicado: (2012)

The metaRbolomics Toolbox in Bioconductor and beyond
por: Stanstrup, Jan, et al.
Publicado: (2019)

Bioinformatics and computational biology solutions using R and bioconductor
por: Gentleman, Robert, et al.
Publicado: (2005)

GSAR: Bioconductor package for Gene Set analysis in R
por: Rahmatallah, Yasir, et al.
Publicado: (2017)

CAGEfightR: analysis of 5′-end data using R/Bioconductor
por: Thodberg, Malte, et al.
Publicado: (2019)

rGREAT: an R/bioconductor package for functional enrichment on genomic regions
por: Gu, Zuguang, et al.
Publicado: (2022)

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis
por: Stocker, Gernot, et al.
Publicado: (2009)

Bioconductor case studies
por: Hahne, Florian, et al.
Publicado: (2008)

scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor
por: Amarasinghe, Shanika L, et al.
Publicado: (2023)

TAMEE: data management and analysis for tissue microarrays
por: Thallinger, Gerhard G, et al.
Publicado: (2007)

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor
por: Zhang, Jitao David, et al.
Publicado: (2009)

MADAM - An open source meta-analysis toolbox for R and Bioconductor
por: Kugler, Karl G, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_so0mg7t5n07q6k4nu9r345oq6p