GRAMM-X public web server for protein–protein docking

Protein docking software GRAMM-X and its web interface () extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software an...

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Detalles Bibliográficos
Autores principales: Tovchigrechko, Andrey, Vakser, Ilya A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538913/
https://www.ncbi.nlm.nih.gov/pubmed/16845016
http://dx.doi.org/10.1093/nar/gkl206
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author Tovchigrechko, Andrey
Vakser, Ilya A.
author_facet Tovchigrechko, Andrey
Vakser, Ilya A.
author_sort Tovchigrechko, Andrey
collection PubMed
description Protein docking software GRAMM-X and its web interface () extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track.
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spelling pubmed-15389132006-08-18 GRAMM-X public web server for protein–protein docking Tovchigrechko, Andrey Vakser, Ilya A. Nucleic Acids Res Article Protein docking software GRAMM-X and its web interface () extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track. Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538913/ /pubmed/16845016 http://dx.doi.org/10.1093/nar/gkl206 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Tovchigrechko, Andrey
Vakser, Ilya A.
GRAMM-X public web server for protein–protein docking
title GRAMM-X public web server for protein–protein docking
title_full GRAMM-X public web server for protein–protein docking
title_fullStr GRAMM-X public web server for protein–protein docking
title_full_unstemmed GRAMM-X public web server for protein–protein docking
title_short GRAMM-X public web server for protein–protein docking
title_sort gramm-x public web server for protein–protein docking
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538913/
https://www.ncbi.nlm.nih.gov/pubmed/16845016
http://dx.doi.org/10.1093/nar/gkl206
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