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Protein Peeling 2: a web server to convert protein structures into series of protein units
Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze th...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538916/ https://www.ncbi.nlm.nih.gov/pubmed/16845113 http://dx.doi.org/10.1093/nar/gkl292 |
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author | Gelly, J.-C. Etchebest, C. Hazout, S. de Brevern, A.G. |
author_facet | Gelly, J.-C. Etchebest, C. Hazout, S. de Brevern, A.G. |
author_sort | Gelly, J.-C. |
collection | PubMed |
description | Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from . |
format | Text |
id | pubmed-1538916 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-15389162006-08-18 Protein Peeling 2: a web server to convert protein structures into series of protein units Gelly, J.-C. Etchebest, C. Hazout, S. de Brevern, A.G. Nucleic Acids Res Article Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538916/ /pubmed/16845113 http://dx.doi.org/10.1093/nar/gkl292 Text en © The Author 2006. Published by Oxford University Press. All rights reserved |
spellingShingle | Article Gelly, J.-C. Etchebest, C. Hazout, S. de Brevern, A.G. Protein Peeling 2: a web server to convert protein structures into series of protein units |
title | Protein Peeling 2: a web server to convert protein structures into series of protein units |
title_full | Protein Peeling 2: a web server to convert protein structures into series of protein units |
title_fullStr | Protein Peeling 2: a web server to convert protein structures into series of protein units |
title_full_unstemmed | Protein Peeling 2: a web server to convert protein structures into series of protein units |
title_short | Protein Peeling 2: a web server to convert protein structures into series of protein units |
title_sort | protein peeling 2: a web server to convert protein structures into series of protein units |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538916/ https://www.ncbi.nlm.nih.gov/pubmed/16845113 http://dx.doi.org/10.1093/nar/gkl292 |
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