Cargando…

Protein Peeling 2: a web server to convert protein structures into series of protein units

Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze th...

Descripción completa

Detalles Bibliográficos
Autores principales: Gelly, J.-C., Etchebest, C., Hazout, S., de Brevern, A.G.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538916/
https://www.ncbi.nlm.nih.gov/pubmed/16845113
http://dx.doi.org/10.1093/nar/gkl292
_version_ 1782129152021757952
author Gelly, J.-C.
Etchebest, C.
Hazout, S.
de Brevern, A.G.
author_facet Gelly, J.-C.
Etchebest, C.
Hazout, S.
de Brevern, A.G.
author_sort Gelly, J.-C.
collection PubMed
description Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from .
format Text
id pubmed-1538916
institution National Center for Biotechnology Information
language English
publishDate 2006
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-15389162006-08-18 Protein Peeling 2: a web server to convert protein structures into series of protein units Gelly, J.-C. Etchebest, C. Hazout, S. de Brevern, A.G. Nucleic Acids Res Article Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from . Oxford University Press 2006-07-01 2006-07-14 /pmc/articles/PMC1538916/ /pubmed/16845113 http://dx.doi.org/10.1093/nar/gkl292 Text en © The Author 2006. Published by Oxford University Press. All rights reserved
spellingShingle Article
Gelly, J.-C.
Etchebest, C.
Hazout, S.
de Brevern, A.G.
Protein Peeling 2: a web server to convert protein structures into series of protein units
title Protein Peeling 2: a web server to convert protein structures into series of protein units
title_full Protein Peeling 2: a web server to convert protein structures into series of protein units
title_fullStr Protein Peeling 2: a web server to convert protein structures into series of protein units
title_full_unstemmed Protein Peeling 2: a web server to convert protein structures into series of protein units
title_short Protein Peeling 2: a web server to convert protein structures into series of protein units
title_sort protein peeling 2: a web server to convert protein structures into series of protein units
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538916/
https://www.ncbi.nlm.nih.gov/pubmed/16845113
http://dx.doi.org/10.1093/nar/gkl292
work_keys_str_mv AT gellyjc proteinpeeling2awebservertoconvertproteinstructuresintoseriesofproteinunits
AT etchebestc proteinpeeling2awebservertoconvertproteinstructuresintoseriesofproteinunits
AT hazouts proteinpeeling2awebservertoconvertproteinstructuresintoseriesofproteinunits
AT debrevernag proteinpeeling2awebservertoconvertproteinstructuresintoseriesofproteinunits