Reference based annotation with GeneMapper

We introduce GeneMapper, a program for transferring annotations from a well annotated genome to other genomes. Drawing on high quality curated annotations, GeneMapper enables rapid and accurate annotation of newly sequenced genomes and is suitable for both finished and draft genomes. GeneMapper uses...

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Detalles Bibliográficos
Autores principales: Chatterji, Sourav, Pachter, Lior
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557983/
https://www.ncbi.nlm.nih.gov/pubmed/16600017
http://dx.doi.org/10.1186/gb-2006-7-4-r29
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author Chatterji, Sourav
Pachter, Lior
author_facet Chatterji, Sourav
Pachter, Lior
author_sort Chatterji, Sourav
collection PubMed
description We introduce GeneMapper, a program for transferring annotations from a well annotated genome to other genomes. Drawing on high quality curated annotations, GeneMapper enables rapid and accurate annotation of newly sequenced genomes and is suitable for both finished and draft genomes. GeneMapper uses a profile based approach for mapping genes into multiple species, improving upon the standard pairwise approach. GeneMapper is freely available for academic use.
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spelling pubmed-15579832006-09-02 Reference based annotation with GeneMapper Chatterji, Sourav Pachter, Lior Genome Biol Software We introduce GeneMapper, a program for transferring annotations from a well annotated genome to other genomes. Drawing on high quality curated annotations, GeneMapper enables rapid and accurate annotation of newly sequenced genomes and is suitable for both finished and draft genomes. GeneMapper uses a profile based approach for mapping genes into multiple species, improving upon the standard pairwise approach. GeneMapper is freely available for academic use. BioMed Central 2006 2006-04-05 /pmc/articles/PMC1557983/ /pubmed/16600017 http://dx.doi.org/10.1186/gb-2006-7-4-r29 Text en Copyright © 2006 Chatterji and Pachter; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Chatterji, Sourav
Pachter, Lior
Reference based annotation with GeneMapper
title Reference based annotation with GeneMapper
title_full Reference based annotation with GeneMapper
title_fullStr Reference based annotation with GeneMapper
title_full_unstemmed Reference based annotation with GeneMapper
title_short Reference based annotation with GeneMapper
title_sort reference based annotation with genemapper
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557983/
https://www.ncbi.nlm.nih.gov/pubmed/16600017
http://dx.doi.org/10.1186/gb-2006-7-4-r29
work_keys_str_mv AT chatterjisourav referencebasedannotationwithgenemapper
AT pachterlior referencebasedannotationwithgenemapper

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