GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers

Global gene-expression analysis is carried out using different technologies that are either array- or sequence-tag-based. To compare experiments that are performed on these different platforms, array probes and sequence tags need to be linked. An additional challenge is cross-referencing between spe...

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Detalles Bibliográficos
Autores principales: Svensson, B Anders T, Kreeft, Arja J, van Ommen, Gert-Jan B, den Dunnen, Johan T, Boer, Judith M
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2003
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC156591/
https://www.ncbi.nlm.nih.gov/pubmed/12734015
http://dx.doi.org/10.1186/gb-2003-4-5-r35
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author Svensson, B Anders T
Kreeft, Arja J
van Ommen, Gert-Jan B
den Dunnen, Johan T
Boer, Judith M
author_facet Svensson, B Anders T
Kreeft, Arja J
van Ommen, Gert-Jan B
den Dunnen, Johan T
Boer, Judith M
author_sort Svensson, B Anders T
collection PubMed
description Global gene-expression analysis is carried out using different technologies that are either array- or sequence-tag-based. To compare experiments that are performed on these different platforms, array probes and sequence tags need to be linked. An additional challenge is cross-referencing between species, to compare human profiles with those obtained in a mouse model, for example. We have developed the web-based search engine GeneHopper to link different expression resources based on UniGene clusters and HomoloGene orthologs databases of the National Center for Biotechnology Information (NCBI).
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spelling pubmed-1565912003-06-05 GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers Svensson, B Anders T Kreeft, Arja J van Ommen, Gert-Jan B den Dunnen, Johan T Boer, Judith M Genome Biol Software Global gene-expression analysis is carried out using different technologies that are either array- or sequence-tag-based. To compare experiments that are performed on these different platforms, array probes and sequence tags need to be linked. An additional challenge is cross-referencing between species, to compare human profiles with those obtained in a mouse model, for example. We have developed the web-based search engine GeneHopper to link different expression resources based on UniGene clusters and HomoloGene orthologs databases of the National Center for Biotechnology Information (NCBI). BioMed Central 2003 2003-04-25 /pmc/articles/PMC156591/ /pubmed/12734015 http://dx.doi.org/10.1186/gb-2003-4-5-r35 Text en Copyright © 2003 Svensson et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying andredistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL
spellingShingle Software
Svensson, B Anders T
Kreeft, Arja J
van Ommen, Gert-Jan B
den Dunnen, Johan T
Boer, Judith M
GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title_full GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title_fullStr GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title_full_unstemmed GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title_short GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers
title_sort genehopper: a web-based search engine to link gene-expression platforms through genbank accession numbers
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC156591/
https://www.ncbi.nlm.nih.gov/pubmed/12734015
http://dx.doi.org/10.1186/gb-2003-4-5-r35
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