Cargando…

Genome comparison using Gene Ontology (GO) with statistical testing

BACKGROUND: Automated comparison of complete sets of genes encoded in two genomes can provide insight on the genetic basis of differences in biological traits between species. Gene ontology (GO) is used as a common vocabulary to annotate genes for comparison. Current approaches calculate the fold of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cai, Zhaotao, Mao, Xizeng, Li, Songgang, Wei, Liping
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1569881/ https://www.ncbi.nlm.nih.gov/pubmed/16901353 http://dx.doi.org/10.1186/1471-2105-7-374

Ejemplares similares

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data
por: Carvalho, Paulo C, et al.
Publicado: (2009)

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
por: Huang, Wen-Lin, et al.
Publicado: (2008)

STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
por: Wittkop, Tobias, et al.
Publicado: (2013)

A shortcut for multiple testing on the directed acyclic graph of gene ontology
por: Saunders, Garrett, et al.
Publicado: (2014)

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology
por: Hill, David P, et al.
Publicado: (2013)

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation
por: Van Auken, Kimberly, et al.
Publicado: (2009)

Statistical integration of two omics datasets using GO2PLS
por: Gu, Zhujie, et al.
Publicado: (2021)

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets
por: Liang, Kun, et al.
Publicado: (2018)

The Gene Ontology (GO) project in 2006
Publicado: (2006)

Gene Ontology Consortium: going forward
Publicado: (2014)

An ontology approach to comparative phenomics in plants
por: Oellrich, Anika, et al.
Publicado: (2015)

Defining functional distances over Gene Ontology
por: del Pozo, Angela, et al.
Publicado: (2008)

PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms
por: Bruckskotten, Marc, et al.
Publicado: (2010)

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
por: Du, Pan, et al.
Publicado: (2009)

Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea
por: Vos, Rutger A., et al.
Publicado: (2022)

Amplification of the Gene Ontology annotation of Affymetrix probe sets
por: Muro, Enrique M, et al.
Publicado: (2006)

Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
por: Lei, Zhengdeng, et al.
Publicado: (2006)

Automatic, context-specific generation of Gene Ontology slims
por: Davis, Melissa J, et al.
Publicado: (2010)

The language of gene ontology: a Zipf’s law analysis
por: Kalankesh, Leila Ranandeh, et al.
Publicado: (2012)

Initial Implementation of a Comparative Data Analysis Ontology
por: Prosdocimi, Francisco, et al.
Publicado: (2009)

The ontology of biological sequences
por: Hoehndorf, Robert, et al.
Publicado: (2009)

GOing Forward With the Cardiac Conduction System Using Gene Ontology
por: Chloe Li, Kan Yan, et al.
Publicado: (2022)

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies
por: Hoehndorf, Robert, et al.
Publicado: (2007)

A method for increasing expressivity of Gene Ontology annotations using a compositional approach
por: Huntley, Rachael P, et al.
Publicado: (2014)

Automatic annotation of protein motif function with Gene Ontology terms
por: Lu, Xinghua, et al.
Publicado: (2004)

Multi-label literature classification based on the Gene Ontology graph
por: Jin, Bo, et al.
Publicado: (2008)

Gene ontology based transfer learning for protein subcellular localization
por: Mei, Suyu, et al.
Publicado: (2011)

Automatic consistency assurance for literature-based gene ontology annotation
por: Chen, Jiyu, et al.
Publicado: (2021)

Automatic diagnosis of COVID-19 infection based on ontology reasoning
por: Wu, Huanhuan, et al.
Publicado: (2021)

A new measure for functional similarity of gene products based on Gene Ontology
por: Schlicker, Andreas, et al.
Publicado: (2006)

Applying Support Vector Machines for Gene ontology based gene function prediction
por: Vinayagam, Arunachalam, et al.
Publicado: (2004)

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments
por: Roncaglia, Paola, et al.
Publicado: (2013)

Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
por: Bergemann, Tracy L, et al.
Publicado: (2011)

Inferring ontology graph structures using OWL reasoning
por: Rodríguez-García, Miguel Ángel, et al.
Publicado: (2018)

Comparison of small n statistical tests of differential expression applied to microarrays
por: Murie, Carl, et al.
Publicado: (2009)

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology
por: Jain, Shobhit, et al.
Publicado: (2010)

An ontology for Xenopus anatomy and development
por: Segerdell, Erik, et al.
Publicado: (2008)

Logical Development of the Cell Ontology
por: Meehan, Terrence F, et al.
Publicado: (2011)

A relation based measure of semantic similarity for Gene Ontology annotations
por: Sheehan, Brendan, et al.
Publicado: (2008)

Generation of Gene Ontology benchmark datasets with various types of positive signal
por: Törönen, Petri, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_ujmmnf50m6sr49tcnplbnodpgn