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RDMAS: a web server for RNA deleterious mutation analysis

BACKGROUND: The diverse functions of ncRNAs critically depend on their structures. Mutations in ncRNAs disrupting the structures of functional sites are expected to be deleterious. RNA deleterious mutations have attracted wide attentions because some of them in cells result in serious disease, and s...

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Autores principales: Shu, Wenjie, Bo, Xiaochen, Liu, Rujia, Zhao, Dongsheng, Zheng, Zhiqiang, Wang, Shengqi
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574353/
https://www.ncbi.nlm.nih.gov/pubmed/16956394
http://dx.doi.org/10.1186/1471-2105-7-404
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author Shu, Wenjie
Bo, Xiaochen
Liu, Rujia
Zhao, Dongsheng
Zheng, Zhiqiang
Wang, Shengqi
author_facet Shu, Wenjie
Bo, Xiaochen
Liu, Rujia
Zhao, Dongsheng
Zheng, Zhiqiang
Wang, Shengqi
author_sort Shu, Wenjie
collection PubMed
description BACKGROUND: The diverse functions of ncRNAs critically depend on their structures. Mutations in ncRNAs disrupting the structures of functional sites are expected to be deleterious. RNA deleterious mutations have attracted wide attentions because some of them in cells result in serious disease, and some others in microbes influence their fitness. RESULTS: The RDMAS web server we describe here is an online tool for evaluating structural deleteriousness of single nucleotide mutation in RNA genes. Several structure comparison methods have been integrated; sub-optimal structures predicted can be optionally involved to mitigate the uncertainty of secondary structure prediction. With a user-friendly interface, the web application is easy to use. Intuitive illustrations are provided along with the original computational results to facilitate quick analysis. CONCLUSION: RDMAS can be used to explore the structure alterations which cause mutations pathogenic, and to predict deleterious mutations which may help to determine the functionally critical regions. RDMAS is freely accessed via .
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spelling pubmed-15743532006-09-26 RDMAS: a web server for RNA deleterious mutation analysis Shu, Wenjie Bo, Xiaochen Liu, Rujia Zhao, Dongsheng Zheng, Zhiqiang Wang, Shengqi BMC Bioinformatics Software BACKGROUND: The diverse functions of ncRNAs critically depend on their structures. Mutations in ncRNAs disrupting the structures of functional sites are expected to be deleterious. RNA deleterious mutations have attracted wide attentions because some of them in cells result in serious disease, and some others in microbes influence their fitness. RESULTS: The RDMAS web server we describe here is an online tool for evaluating structural deleteriousness of single nucleotide mutation in RNA genes. Several structure comparison methods have been integrated; sub-optimal structures predicted can be optionally involved to mitigate the uncertainty of secondary structure prediction. With a user-friendly interface, the web application is easy to use. Intuitive illustrations are provided along with the original computational results to facilitate quick analysis. CONCLUSION: RDMAS can be used to explore the structure alterations which cause mutations pathogenic, and to predict deleterious mutations which may help to determine the functionally critical regions. RDMAS is freely accessed via . BioMed Central 2006-09-06 /pmc/articles/PMC1574353/ /pubmed/16956394 http://dx.doi.org/10.1186/1471-2105-7-404 Text en Copyright © 2006 Shu et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Shu, Wenjie
Bo, Xiaochen
Liu, Rujia
Zhao, Dongsheng
Zheng, Zhiqiang
Wang, Shengqi
RDMAS: a web server for RNA deleterious mutation analysis
title RDMAS: a web server for RNA deleterious mutation analysis
title_full RDMAS: a web server for RNA deleterious mutation analysis
title_fullStr RDMAS: a web server for RNA deleterious mutation analysis
title_full_unstemmed RDMAS: a web server for RNA deleterious mutation analysis
title_short RDMAS: a web server for RNA deleterious mutation analysis
title_sort rdmas: a web server for rna deleterious mutation analysis
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574353/
https://www.ncbi.nlm.nih.gov/pubmed/16956394
http://dx.doi.org/10.1186/1471-2105-7-404
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