Cargando…

Robust computational reconstitution – a new method for the comparative analysis of gene expression in tissues and isolated cell fractions

BACKGROUND: Biological tissues consist of various cell types that differentially contribute to physiological and pathophysiological processes. Determining and analyzing cell type-specific gene expression under diverse conditions is therefore a central aim of biomedical research. The present study co...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hoffmann, Martin, Pohlers, Dirk, Koczan, Dirk, Thiesen, Hans-Jürgen, Wölfl, Stefan, Kinne, Raimund W
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574358/ https://www.ncbi.nlm.nih.gov/pubmed/16889662 http://dx.doi.org/10.1186/1471-2105-7-369

Ejemplares similares

Constitutive upregulation of the transforming growth factor-β pathway in rheumatoid arthritis synovial fibroblasts
por: Pohlers, Dirk, et al.
Publicado: (2007)

Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis
por: Kupfer, Peter, et al.
Publicado: (2012)

Identification of intra-group, inter-individual, and gene-specific variances in mRNA expression profiles in the rheumatoid arthritis synovial membrane
por: Huber, René, et al.
Publicado: (2008)

Adapted Boolean network models for extracellular matrix formation
por: Wollbold, Johannes, et al.
Publicado: (2009)

Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation
por: Woetzel, Dirk, et al.
Publicado: (2014)

In vitro model for the analysis of synovial fibroblast-mediated degradation of intact cartilage
por: Pretzel, David, et al.
Publicado: (2009)

Robust reconstitution of active cell-cycle control complexes from co-expressed proteins in bacteria
por: Harashima, Hirofumi, et al.
Publicado: (2012)

Differential clinical efficacy of anti-CD4 monoclonal antibodies in rat adjuvant arthritis is paralleled by differential influence on NF-κB binding activity and TNF-α secretion of T cells
por: Pohlers, Dirk, et al.
Publicado: (2002)

Expression of cytokine mRNA and protein in joints and lymphoid organs during the course of rat antigen-induced arthritis
por: Pohlers, Dirk, et al.
Publicado: (2005)

Combining global genome and transcriptome approaches to identify the candidate genes of small-effect quantitative trait loci in collagen-induced arthritis
por: Yu, Xinhua, et al.
Publicado: (2007)

Expression profiling of a high-fertility mouse line by microarray analysis and qPCR
por: Vanselow, Jens, et al.
Publicado: (2008)

Tumour Fas ligand:Fas ratio greater than 1 is an independent marker of relative resistance to tamoxifen therapy in hormone receptor positive breast cancer
por: Reimer, Toralf, et al.
Publicado: (2002)

SLCO1B1*5 polymorphism (rs4149056) is associated with chemotherapy-induced amenorrhea in premenopausal women with breast cancer: a prospective cohort study
por: Reimer, Toralf, et al.
Publicado: (2016)

High CXCR3 expression in synovial mast cells associated with CXCL9 and CXCL10 expression in inflammatory synovial tissues of patients with rheumatoid arthritis
por: Ruschpler, Peter, et al.
Publicado: (2003)

Differential gene expression in pristane-induced arthritis susceptible DA versus resistant E3 rats
por: Wester, Lena, et al.
Publicado: (2003)

Novel application of multi-stimuli network inference to synovial fibroblasts of rheumatoid arthritis patients
por: Kupfer, Peter, et al.
Publicado: (2014)

Association of Human FOS Promoter Variants with the Occurrence of Knee-Osteoarthritis in a Case Control Association Study
por: Huber, René, et al.
Publicado: (2019)

A simple and robust method for isolating and analyzing chromatin-bound RNAs in Arabidopsis
por: Zhang, Qiqi, et al.
Publicado: (2022)

Robust and rigorous identification of tissue-specific genes by statistically extending tau score
por: Lüleci, Hatice Büşra, et al.
Publicado: (2022)

Advanced analysis of a cryptochrome mutation's effects on the robustness and phase of molecular cycles in isolated peripheral tissues of Drosophila
por: Levine, Joel D, et al.
Publicado: (2002)

On the relevance of technical variation due to building pools in microarray experiments
por: Rudolf, Henrik, et al.
Publicado: (2015)

Molecular discrimination of responders and nonresponders to anti-TNFalpha therapy in rheumatoid arthritis by etanercept
por: Koczan, Dirk, et al.
Publicado: (2008)

MicroRNA Expression Changes during Interferon-Beta Treatment in the Peripheral Blood of Multiple Sclerosis Patients
por: Hecker, Michael, et al.
Publicado: (2013)

Glatiramer acetate treatment effects on gene expression in monocytes of multiple sclerosis patients
por: Thamilarasan, Madhan, et al.
Publicado: (2013)

A rapid and robust assay for detection of S-phase cell cycle progression in plant cells and tissues by using ethynyl deoxyuridine
por: Kotogány, Edit, et al.
Publicado: (2010)

Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering
por: Müller, Lydia, et al.
Publicado: (2016)

An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data
por: Vu, Trung N, et al.
Publicado: (2011)

A simplified but robust method for the isolation of avian and mammalian muscle satellite cells
por: Baquero-Perez, Belinda, et al.
Publicado: (2012)

ATMAD: robust image analysis for Automatic Tissue MicroArray De-arraying
por: Nguyen, Hoai Nam, et al.
Publicado: (2018)

ALL-tRNAseq enables robust tRNA profiling in tissue samples
por: Scheepbouwer, Chantal, et al.
Publicado: (2023)

Perforin deficiency attenuates collagen-induced arthritis
por: Bauer, Kristin, et al.
Publicado: (2005)

A robust design for identification of the Parasite Clearance Estimator
por: Jamsen, Kris M, et al.
Publicado: (2013)

Robust watermark technique using masking and Hermite transform
por: Coronel, Sandra L. Gomez, et al.
Publicado: (2016)

A robustness metric for biological data clustering algorithms
por: Lu, Yuping, et al.
Publicado: (2019)

Integrating computational lead optimization diagnostics with analog design and candidate selection
por: Yonchev, Dimitar, et al.
Publicado: (2020)

Reconstitution of Drosophila and human chromatins by wheat germ cell-free co-expression system
por: Okimune, Kei-ichi, et al.
Publicado: (2020)

Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues
por: Berglund, Emelie, et al.
Publicado: (2020)

Liposomal encapsulation enhances and prolongs the anti-inflammatory effects of water-soluble dexamethasone phosphate in experimental adjuvant arthritis
por: Anderson, Rebecca, et al.
Publicado: (2010)

Population attributable fraction in textbooks: Time to revise
por: Khosravi, Ahmad, et al.
Publicado: (2021)

Relative quantification of TCR Vbeta-chain families by real time PCR for identification of clonal T-cell populations
por: Ochsenreither, Sebastian, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_u4kfbtql0kapteucb38fdrjdrp