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InSatDb: a microsatellite database of fully sequenced insect genomes

InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base p...

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Detalles Bibliográficos
Autores principales: Archak, Sunil, Meduri, Eshwar, Kumar, P. Sravana, Nagaraju, J.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634736/
https://www.ncbi.nlm.nih.gov/pubmed/17082205
http://dx.doi.org/10.1093/nar/gkl778
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author Archak, Sunil
Meduri, Eshwar
Kumar, P. Sravana
Nagaraju, J.
author_facet Archak, Sunil
Meduri, Eshwar
Kumar, P. Sravana
Nagaraju, J.
author_sort Archak, Sunil
collection PubMed
description InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate ‘Analysis’ section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at .
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spelling pubmed-16347362007-02-22 InSatDb: a microsatellite database of fully sequenced insect genomes Archak, Sunil Meduri, Eshwar Kumar, P. Sravana Nagaraju, J. Nucleic Acids Res Articles InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate ‘Analysis’ section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at . Oxford University Press 2007-01 2006-11-01 /pmc/articles/PMC1634736/ /pubmed/17082205 http://dx.doi.org/10.1093/nar/gkl778 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Archak, Sunil
Meduri, Eshwar
Kumar, P. Sravana
Nagaraju, J.
InSatDb: a microsatellite database of fully sequenced insect genomes
title InSatDb: a microsatellite database of fully sequenced insect genomes
title_full InSatDb: a microsatellite database of fully sequenced insect genomes
title_fullStr InSatDb: a microsatellite database of fully sequenced insect genomes
title_full_unstemmed InSatDb: a microsatellite database of fully sequenced insect genomes
title_short InSatDb: a microsatellite database of fully sequenced insect genomes
title_sort insatdb: a microsatellite database of fully sequenced insect genomes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634736/
https://www.ncbi.nlm.nih.gov/pubmed/17082205
http://dx.doi.org/10.1093/nar/gkl778
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