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InSatDb: a microsatellite database of fully sequenced insect genomes
InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base p...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2007
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634736/ https://www.ncbi.nlm.nih.gov/pubmed/17082205 http://dx.doi.org/10.1093/nar/gkl778 |
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author | Archak, Sunil Meduri, Eshwar Kumar, P. Sravana Nagaraju, J. |
author_facet | Archak, Sunil Meduri, Eshwar Kumar, P. Sravana Nagaraju, J. |
author_sort | Archak, Sunil |
collection | PubMed |
description | InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate ‘Analysis’ section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at . |
format | Text |
id | pubmed-1634736 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-16347362007-02-22 InSatDb: a microsatellite database of fully sequenced insect genomes Archak, Sunil Meduri, Eshwar Kumar, P. Sravana Nagaraju, J. Nucleic Acids Res Articles InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate ‘Analysis’ section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at . Oxford University Press 2007-01 2006-11-01 /pmc/articles/PMC1634736/ /pubmed/17082205 http://dx.doi.org/10.1093/nar/gkl778 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Archak, Sunil Meduri, Eshwar Kumar, P. Sravana Nagaraju, J. InSatDb: a microsatellite database of fully sequenced insect genomes |
title | InSatDb: a microsatellite database of fully sequenced insect genomes |
title_full | InSatDb: a microsatellite database of fully sequenced insect genomes |
title_fullStr | InSatDb: a microsatellite database of fully sequenced insect genomes |
title_full_unstemmed | InSatDb: a microsatellite database of fully sequenced insect genomes |
title_short | InSatDb: a microsatellite database of fully sequenced insect genomes |
title_sort | insatdb: a microsatellite database of fully sequenced insect genomes |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634736/ https://www.ncbi.nlm.nih.gov/pubmed/17082205 http://dx.doi.org/10.1093/nar/gkl778 |
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