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The Marine Viromes of Four Oceanic Regions
Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634881/ https://www.ncbi.nlm.nih.gov/pubmed/17090214 http://dx.doi.org/10.1371/journal.pbio.0040368 |
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author | Angly, Florent E Felts, Ben Breitbart, Mya Salamon, Peter Edwards, Robert A Carlson, Craig Chan, Amy M Haynes, Matthew Kelley, Scott Liu, Hong Mahaffy, Joseph M Mueller, Jennifer E Nulton, Jim Olson, Robert Parsons, Rachel Rayhawk, Steve Suttle, Curtis A Rohwer, Forest |
author_facet | Angly, Florent E Felts, Ben Breitbart, Mya Salamon, Peter Edwards, Robert A Carlson, Craig Chan, Amy M Haynes, Matthew Kelley, Scott Liu, Hong Mahaffy, Joseph M Mueller, Jennifer E Nulton, Jim Olson, Robert Parsons, Rachel Rayhawk, Steve Suttle, Curtis A Rohwer, Forest |
author_sort | Angly, Florent E |
collection | PubMed |
description | Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure. |
format | Text |
id | pubmed-1634881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-16348812006-11-17 The Marine Viromes of Four Oceanic Regions Angly, Florent E Felts, Ben Breitbart, Mya Salamon, Peter Edwards, Robert A Carlson, Craig Chan, Amy M Haynes, Matthew Kelley, Scott Liu, Hong Mahaffy, Joseph M Mueller, Jennifer E Nulton, Jim Olson, Robert Parsons, Rachel Rayhawk, Steve Suttle, Curtis A Rohwer, Forest PLoS Biol Research Article Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure. Public Library of Science 2006-11 2006-11-07 /pmc/articles/PMC1634881/ /pubmed/17090214 http://dx.doi.org/10.1371/journal.pbio.0040368 Text en © 2006 Angly et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Angly, Florent E Felts, Ben Breitbart, Mya Salamon, Peter Edwards, Robert A Carlson, Craig Chan, Amy M Haynes, Matthew Kelley, Scott Liu, Hong Mahaffy, Joseph M Mueller, Jennifer E Nulton, Jim Olson, Robert Parsons, Rachel Rayhawk, Steve Suttle, Curtis A Rohwer, Forest The Marine Viromes of Four Oceanic Regions |
title | The Marine Viromes of Four Oceanic Regions |
title_full | The Marine Viromes of Four Oceanic Regions |
title_fullStr | The Marine Viromes of Four Oceanic Regions |
title_full_unstemmed | The Marine Viromes of Four Oceanic Regions |
title_short | The Marine Viromes of Four Oceanic Regions |
title_sort | marine viromes of four oceanic regions |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634881/ https://www.ncbi.nlm.nih.gov/pubmed/17090214 http://dx.doi.org/10.1371/journal.pbio.0040368 |
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