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The Marine Viromes of Four Oceanic Regions

Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over...

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Autores principales: Angly, Florent E, Felts, Ben, Breitbart, Mya, Salamon, Peter, Edwards, Robert A, Carlson, Craig, Chan, Amy M, Haynes, Matthew, Kelley, Scott, Liu, Hong, Mahaffy, Joseph M, Mueller, Jennifer E, Nulton, Jim, Olson, Robert, Parsons, Rachel, Rayhawk, Steve, Suttle, Curtis A, Rohwer, Forest
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2006
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634881/
https://www.ncbi.nlm.nih.gov/pubmed/17090214
http://dx.doi.org/10.1371/journal.pbio.0040368
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author Angly, Florent E
Felts, Ben
Breitbart, Mya
Salamon, Peter
Edwards, Robert A
Carlson, Craig
Chan, Amy M
Haynes, Matthew
Kelley, Scott
Liu, Hong
Mahaffy, Joseph M
Mueller, Jennifer E
Nulton, Jim
Olson, Robert
Parsons, Rachel
Rayhawk, Steve
Suttle, Curtis A
Rohwer, Forest
author_facet Angly, Florent E
Felts, Ben
Breitbart, Mya
Salamon, Peter
Edwards, Robert A
Carlson, Craig
Chan, Amy M
Haynes, Matthew
Kelley, Scott
Liu, Hong
Mahaffy, Joseph M
Mueller, Jennifer E
Nulton, Jim
Olson, Robert
Parsons, Rachel
Rayhawk, Steve
Suttle, Curtis A
Rohwer, Forest
author_sort Angly, Florent E
collection PubMed
description Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.
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spelling pubmed-16348812006-11-17 The Marine Viromes of Four Oceanic Regions Angly, Florent E Felts, Ben Breitbart, Mya Salamon, Peter Edwards, Robert A Carlson, Craig Chan, Amy M Haynes, Matthew Kelley, Scott Liu, Hong Mahaffy, Joseph M Mueller, Jennifer E Nulton, Jim Olson, Robert Parsons, Rachel Rayhawk, Steve Suttle, Curtis A Rohwer, Forest PLoS Biol Research Article Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure. Public Library of Science 2006-11 2006-11-07 /pmc/articles/PMC1634881/ /pubmed/17090214 http://dx.doi.org/10.1371/journal.pbio.0040368 Text en © 2006 Angly et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Angly, Florent E
Felts, Ben
Breitbart, Mya
Salamon, Peter
Edwards, Robert A
Carlson, Craig
Chan, Amy M
Haynes, Matthew
Kelley, Scott
Liu, Hong
Mahaffy, Joseph M
Mueller, Jennifer E
Nulton, Jim
Olson, Robert
Parsons, Rachel
Rayhawk, Steve
Suttle, Curtis A
Rohwer, Forest
The Marine Viromes of Four Oceanic Regions
title The Marine Viromes of Four Oceanic Regions
title_full The Marine Viromes of Four Oceanic Regions
title_fullStr The Marine Viromes of Four Oceanic Regions
title_full_unstemmed The Marine Viromes of Four Oceanic Regions
title_short The Marine Viromes of Four Oceanic Regions
title_sort marine viromes of four oceanic regions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634881/
https://www.ncbi.nlm.nih.gov/pubmed/17090214
http://dx.doi.org/10.1371/journal.pbio.0040368
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