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Xanthusbase: adapting wikipedia principles to a model organism database
xanthusBase () is the official model organism database (MOD) for the social bacterium Myxococcus xanthus. In many respects, M.xanthus represents the pioneer model organism (MO) for studying the genetic, biochemical, and mechanistic basis of prokaryotic multicellularity, a topic that has garnered con...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669732/ https://www.ncbi.nlm.nih.gov/pubmed/17090585 http://dx.doi.org/10.1093/nar/gkl881 |
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author | Arshinoff, Bradley I. Suen, Garret Just, Eric M. Merchant, Sohel M. Kibbe, Warren A. Chisholm, Rex L. Welch, Roy D. |
author_facet | Arshinoff, Bradley I. Suen, Garret Just, Eric M. Merchant, Sohel M. Kibbe, Warren A. Chisholm, Rex L. Welch, Roy D. |
author_sort | Arshinoff, Bradley I. |
collection | PubMed |
description | xanthusBase () is the official model organism database (MOD) for the social bacterium Myxococcus xanthus. In many respects, M.xanthus represents the pioneer model organism (MO) for studying the genetic, biochemical, and mechanistic basis of prokaryotic multicellularity, a topic that has garnered considerable attention due to the significance of biofilms in both basic and applied microbiology research. To facilitate its utility, the design of xanthusBase incorporates open-source software, leveraging the cumulative experience made available through the Generic Model Organism Database (GMOD) project, MediaWiki (), and dictyBase (), to create a MOD that is both highly useful and easily navigable. In addition, we have incorporated a unique Wikipedia-style curation model which exploits the internet's inherent interactivity, thus enabling M.xanthus and other myxobacterial researchers to contribute directly toward the ongoing genome annotation. |
format | Text |
id | pubmed-1669732 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-16697322007-02-22 Xanthusbase: adapting wikipedia principles to a model organism database Arshinoff, Bradley I. Suen, Garret Just, Eric M. Merchant, Sohel M. Kibbe, Warren A. Chisholm, Rex L. Welch, Roy D. Nucleic Acids Res Articles xanthusBase () is the official model organism database (MOD) for the social bacterium Myxococcus xanthus. In many respects, M.xanthus represents the pioneer model organism (MO) for studying the genetic, biochemical, and mechanistic basis of prokaryotic multicellularity, a topic that has garnered considerable attention due to the significance of biofilms in both basic and applied microbiology research. To facilitate its utility, the design of xanthusBase incorporates open-source software, leveraging the cumulative experience made available through the Generic Model Organism Database (GMOD) project, MediaWiki (), and dictyBase (), to create a MOD that is both highly useful and easily navigable. In addition, we have incorporated a unique Wikipedia-style curation model which exploits the internet's inherent interactivity, thus enabling M.xanthus and other myxobacterial researchers to contribute directly toward the ongoing genome annotation. Oxford University Press 2007-01 2006-11-07 /pmc/articles/PMC1669732/ /pubmed/17090585 http://dx.doi.org/10.1093/nar/gkl881 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Arshinoff, Bradley I. Suen, Garret Just, Eric M. Merchant, Sohel M. Kibbe, Warren A. Chisholm, Rex L. Welch, Roy D. Xanthusbase: adapting wikipedia principles to a model organism database |
title | Xanthusbase: adapting wikipedia principles to a model organism database |
title_full | Xanthusbase: adapting wikipedia principles to a model organism database |
title_fullStr | Xanthusbase: adapting wikipedia principles to a model organism database |
title_full_unstemmed | Xanthusbase: adapting wikipedia principles to a model organism database |
title_short | Xanthusbase: adapting wikipedia principles to a model organism database |
title_sort | xanthusbase: adapting wikipedia principles to a model organism database |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669732/ https://www.ncbi.nlm.nih.gov/pubmed/17090585 http://dx.doi.org/10.1093/nar/gkl881 |
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