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The Sulfolobus database

The Sulfolobus database () integrates, for the first time, all currently available Sulfolobus chromosome sequences with annotations. It also includes all the sequence data for the extrachromosomal elements which can propagate in Sulfolobus organisms. All genomes and annotations deposited in GenBank...

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Detalles Bibliográficos
Autor principal: Brügger, Kim
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669736/
https://www.ncbi.nlm.nih.gov/pubmed/17088281
http://dx.doi.org/10.1093/nar/gkl847
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author Brügger, Kim
author_facet Brügger, Kim
author_sort Brügger, Kim
collection PubMed
description The Sulfolobus database () integrates, for the first time, all currently available Sulfolobus chromosome sequences with annotations. It also includes all the sequence data for the extrachromosomal elements which can propagate in Sulfolobus organisms. All genomes and annotations deposited in GenBank are included in the database and a genefinder has been run on the sequences to ensure that all potential genes are present, and identifiable, in the database. Every month, all genes are searched against a range of external databases and new results are incorporated. The Sulfolobus database was developed as an asset to the rapidly-growing international community working with Sulfolobus as a model organism for the kingdom Crenarchaeota of the Archaea. It was accessed more that 46 000 times in its first year. The database aims to provide researchers easy access to sequence and gene information and the web-interface includes various searches, free text and BLAST, as well as genome browsing and data extraction. Updated annotations are incorporated regularly and the database will continue to expand as new information becomes available. This includes new sequences, newly identified genes, annotations and other related information.
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spelling pubmed-16697362007-02-22 The Sulfolobus database Brügger, Kim Nucleic Acids Res Articles The Sulfolobus database () integrates, for the first time, all currently available Sulfolobus chromosome sequences with annotations. It also includes all the sequence data for the extrachromosomal elements which can propagate in Sulfolobus organisms. All genomes and annotations deposited in GenBank are included in the database and a genefinder has been run on the sequences to ensure that all potential genes are present, and identifiable, in the database. Every month, all genes are searched against a range of external databases and new results are incorporated. The Sulfolobus database was developed as an asset to the rapidly-growing international community working with Sulfolobus as a model organism for the kingdom Crenarchaeota of the Archaea. It was accessed more that 46 000 times in its first year. The database aims to provide researchers easy access to sequence and gene information and the web-interface includes various searches, free text and BLAST, as well as genome browsing and data extraction. Updated annotations are incorporated regularly and the database will continue to expand as new information becomes available. This includes new sequences, newly identified genes, annotations and other related information. Oxford University Press 2007-01 2006-11-06 /pmc/articles/PMC1669736/ /pubmed/17088281 http://dx.doi.org/10.1093/nar/gkl847 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Brügger, Kim
The Sulfolobus database
title The Sulfolobus database
title_full The Sulfolobus database
title_fullStr The Sulfolobus database
title_full_unstemmed The Sulfolobus database
title_short The Sulfolobus database
title_sort sulfolobus database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669736/
https://www.ncbi.nlm.nih.gov/pubmed/17088281
http://dx.doi.org/10.1093/nar/gkl847
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