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Sequence resources at the Candida Genome Database

The Candida Genome Database (CGD, ) contains a curated collection of genomic information and community resources for researchers who are interested in the molecular biology of the opportunistic pathogen Candida albicans. With the recent release of a new assembly of the C.albicans genome, Assembly 20...

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Autores principales: Arnaud, Martha B., Costanzo, Maria C., Skrzypek, Marek S., Shah, Prachi, Binkley, Gail, Lane, Christopher, Miyasato, Stuart R., Sherlock, Gavin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669745/
https://www.ncbi.nlm.nih.gov/pubmed/17090582
http://dx.doi.org/10.1093/nar/gkl899
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author Arnaud, Martha B.
Costanzo, Maria C.
Skrzypek, Marek S.
Shah, Prachi
Binkley, Gail
Lane, Christopher
Miyasato, Stuart R.
Sherlock, Gavin
author_facet Arnaud, Martha B.
Costanzo, Maria C.
Skrzypek, Marek S.
Shah, Prachi
Binkley, Gail
Lane, Christopher
Miyasato, Stuart R.
Sherlock, Gavin
author_sort Arnaud, Martha B.
collection PubMed
description The Candida Genome Database (CGD, ) contains a curated collection of genomic information and community resources for researchers who are interested in the molecular biology of the opportunistic pathogen Candida albicans. With the recent release of a new assembly of the C.albicans genome, Assembly 20, C.albicans genomics has entered a new era. Although the C.albicans genome assembly continues to undergo refinement, multiple assemblies and gene nomenclatures will remain in widespread use by the research community. CGD has now taken on the responsibility of maintaining the most up-to-date version of the genome sequence by providing the data from this new assembly alongside the data from the previous assemblies, as well as any future corrections and refinements. In this database update, we describe the sequence information available for C.albicans, the sequence information contained in CGD, and the tools for sequence retrieval, analysis and comparison that CGD provides. CGD is freely accessible at and CGD curators may be contacted by email at candida-curator@genome.stanford.edu.
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spelling pubmed-16697452007-02-22 Sequence resources at the Candida Genome Database Arnaud, Martha B. Costanzo, Maria C. Skrzypek, Marek S. Shah, Prachi Binkley, Gail Lane, Christopher Miyasato, Stuart R. Sherlock, Gavin Nucleic Acids Res Articles The Candida Genome Database (CGD, ) contains a curated collection of genomic information and community resources for researchers who are interested in the molecular biology of the opportunistic pathogen Candida albicans. With the recent release of a new assembly of the C.albicans genome, Assembly 20, C.albicans genomics has entered a new era. Although the C.albicans genome assembly continues to undergo refinement, multiple assemblies and gene nomenclatures will remain in widespread use by the research community. CGD has now taken on the responsibility of maintaining the most up-to-date version of the genome sequence by providing the data from this new assembly alongside the data from the previous assemblies, as well as any future corrections and refinements. In this database update, we describe the sequence information available for C.albicans, the sequence information contained in CGD, and the tools for sequence retrieval, analysis and comparison that CGD provides. CGD is freely accessible at and CGD curators may be contacted by email at candida-curator@genome.stanford.edu. Oxford University Press 2007-01 2006-11-07 /pmc/articles/PMC1669745/ /pubmed/17090582 http://dx.doi.org/10.1093/nar/gkl899 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Arnaud, Martha B.
Costanzo, Maria C.
Skrzypek, Marek S.
Shah, Prachi
Binkley, Gail
Lane, Christopher
Miyasato, Stuart R.
Sherlock, Gavin
Sequence resources at the Candida Genome Database
title Sequence resources at the Candida Genome Database
title_full Sequence resources at the Candida Genome Database
title_fullStr Sequence resources at the Candida Genome Database
title_full_unstemmed Sequence resources at the Candida Genome Database
title_short Sequence resources at the Candida Genome Database
title_sort sequence resources at the candida genome database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669745/
https://www.ncbi.nlm.nih.gov/pubmed/17090582
http://dx.doi.org/10.1093/nar/gkl899
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