Cargando…

Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA–tRNA interaction

Colicin E5—a tRNase toxin—specifically cleaves QUN (Q: queuosine) anticodons of the Escherichia coli tRNAs for Tyr, His, Asn and Asp. Here, we report the crystal structure of the C-terminal ribonuclease domain (CRD) of E5 complexed with a substrate analog, namely, dGpdUp, at a resolution of 1.9 Å. T...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yajima, Shunsuke, Inoue, Sakura, Ogawa, Tetsuhiro, Nonaka, Takamasa, Ohsawa, Kanju, Masaki, Haruhiko
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2006
Materias:	Structural Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669751/ https://www.ncbi.nlm.nih.gov/pubmed/17099236 http://dx.doi.org/10.1093/nar/gkl729

Ejemplares similares

Sequence-specific recognition of colicin E5, a tRNA-targeting ribonuclease
por: Ogawa, Tetsuhiro, et al.
Publicado: (2006)

Identification and Sequence Analysis of Metazoan tRNA 3′-End Processing Enzymes tRNase Zs
por: Wang, Zhikang, et al.
Publicado: (2012)

tRNA 3′ processing in yeast involves tRNase Z, Rex1, and Rrp6
por: Skowronek, Ewa, et al.
Publicado: (2014)

Tethered Domains and Flexible Regions in tRNase Z(L), the Long Form of tRNase Z
por: Wilson, Christopher, et al.
Publicado: (2013)

Modulation of Gene Expression by Human Cytosolic tRNase Z(L) through 5′-Half-tRNA
por: Elbarbary, Reyad A., et al.
Publicado: (2009)

Use of a Yeast tRNase Killer Toxin to Diagnose Kti12 Motifs Required for tRNA Modification by Elongator
por: Mehlgarten, Constance, et al.
Publicado: (2017)

Substitutions in conserved regions preceding and within the linker affect activity and flexibility of tRNase Z(L), the long form of tRNase Z
por: Saoura, Makenzie, et al.
Publicado: (2017)

Structural basis for recognition of G-1-containing tRNA by histidyl-tRNA synthetase
por: Tian, Qingnan, et al.
Publicado: (2015)

Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin–antitoxin system: targeting a tRNase to tackle mycobacterial adaptation
por: Deep, Amar, et al.
Publicado: (2018)

Structural basis for recognition of cognate tRNA by tyrosyl-tRNA synthetase from three kingdoms
por: Tsunoda, Masaru, et al.
Publicado: (2007)

Structural basis for the dynamics of human methionyl-tRNA synthetase in multi-tRNA synthetase complexes
por: Kim, Dong Kyu, et al.
Publicado: (2021)

Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase
por: Yu, Zhaoli, et al.
Publicado: (2023)

Structural basis for guide RNA trimming by RNase D ribonuclease in Trypanosoma brucei
por: Gao, Yanqing, et al.
Publicado: (2020)

Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase
por: Ito, Kosuke, et al.
Publicado: (2012)

Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification
por: Yoo, Jaehun, et al.
Publicado: (2023)

A survey of green plant tRNA 3'-end processing enzyme tRNase Zs, homologs of the candidate prostate cancer susceptibility protein ELAC2
por: Fan, Lijuan, et al.
Publicado: (2011)

Identification and analysis of candidate fungal tRNA 3'-end processing endonucleases tRNase Zs, homologs of the putative prostate cancer susceptibility protein ELAC2
por: Zhao, Wei, et al.
Publicado: (2010)

Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans
por: Puppala, Anupama K, et al.
Publicado: (2023)

RloC: a wobble nucleotide-excising and zinc-responsive bacterial tRNase
por: Davidov, Elena, et al.
Publicado: (2008)

Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase
por: Grant, Thomas D., et al.
Publicado: (2012)

Structural insights into RNA unwinding and degradation by RNase R
por: Chu, Lee-Ya, et al.
Publicado: (2017)

Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation
por: Michalska, Karolina, et al.
Publicado: (2021)

Structural basis of tRNA modification with CO(2) fixation and methylation by wybutosine synthesizing enzyme TYW4
por: Suzuki, Yoko, et al.
Publicado: (2009)

Identification by Mn(2+) rescue of two residues essential for the proton transfer of tRNase Z catalysis
por: Minagawa, Asako, et al.
Publicado: (2006)

Structure and Function of Colicin S4, a Colicin with a Duplicated Receptor-binding Domain
por: Arnold, Thomas, et al.
Publicado: (2009)

Inhibition of HIV-1 gene expression by retroviral vector-mediated small-guide RNAs that direct specific RNA cleavage by tRNase ZL
por: Habu, Yuichiro, et al.
Publicado: (2005)

Crystal structure of human cytosolic aspartyl-tRNA synthetase, a component of multi-tRNA synthetase complex
por: Kim, Kyung Rok, et al.
Publicado: (2013)

Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation
por: Abula, Abudureyimu, et al.
Publicado: (2021)

Crystal structure of human selenocysteine tRNA
por: Itoh, Yuzuru, et al.
Publicado: (2009)

Tertiary structure of bacterial selenocysteine tRNA
por: Itoh, Yuzuru, et al.
Publicado: (2013)

Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes
por: Simader, Hannes, et al.
Publicado: (2006)

The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)-methyltransferase provides insights into its tRNA specificity
por: Walbott, Hélène, et al.
Publicado: (2008)

Deinococcus glutaminyl-tRNA synthetase is a chimer between proteins from an ancient and the modern pathways of aminoacyl-tRNA formation
por: Deniziak, Marzanna, et al.
Publicado: (2007)

Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNA(Gln) formation
por: Nureki, Osamu, et al.
Publicado: (2010)

Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition
por: Hirata, Akira, et al.
Publicado: (2019)

RNase MRP Cleaves Pre-tRNA(Ser-Met) in the tRNA Maturation Pathway
por: Saito, Yuichiro, et al.
Publicado: (2014)

The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination
por: Ramos-Morales, Elizabeth, et al.
Publicado: (2021)

Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase and structure-based phylogenetic analysis suggest an archaeal origin of tryptophanyl-tRNA synthetase
por: Dong, Xianchi, et al.
Publicado: (2010)

Structural, biochemical and functional analyses of tRNA-monooxygenase enzyme MiaE from Pseudomonas putida provide insights into tRNA/MiaE interaction
por: Carpentier, Philippe, et al.
Publicado: (2020)

Recognition of tRNA(His) in an RNase P-Free Nanoarchaeum
por: Ivanesthi, Indira Rizqita, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_fqdd3s2qledb9cpc35bhe9he1b