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probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007
probeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved by powerful search tools and via different lists that are based on selected categories such as functional or taxonomic proper...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669758/ https://www.ncbi.nlm.nih.gov/pubmed/17099228 http://dx.doi.org/10.1093/nar/gkl856 |
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author | Loy, Alexander Maixner, Frank Wagner, Michael Horn, Matthias |
author_facet | Loy, Alexander Maixner, Frank Wagner, Michael Horn, Matthias |
author_sort | Loy, Alexander |
collection | PubMed |
description | probeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved by powerful search tools and via different lists that are based on selected categories such as functional or taxonomic properties of the target organism(s) or the hybridization format (fluorescence in situ hybridization or microarray) in which the probes were applied. Additional information on probe coverage and specificity is available through direct submissions of probe sequences from probeBase to RDP-II and Greengenes, two major rRNA sequence databases. A freely editable user comments field for each probe entry allows any user to add, modify or remove information or to report errors in real-time. probeBase entries increased from 700 to more than 1200 during the past three years. Several options for submission of single probes or entire probe sets, even prior to publication of newly developed probes, should further contribute to keeping probeBase an up-to-date and useful resource. probeBase is freely accessible at . Email correspondence can be addressed to probebase@microbial-ecology.net. |
format | Text |
id | pubmed-1669758 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-16697582007-02-22 probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 Loy, Alexander Maixner, Frank Wagner, Michael Horn, Matthias Nucleic Acids Res Articles probeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved by powerful search tools and via different lists that are based on selected categories such as functional or taxonomic properties of the target organism(s) or the hybridization format (fluorescence in situ hybridization or microarray) in which the probes were applied. Additional information on probe coverage and specificity is available through direct submissions of probe sequences from probeBase to RDP-II and Greengenes, two major rRNA sequence databases. A freely editable user comments field for each probe entry allows any user to add, modify or remove information or to report errors in real-time. probeBase entries increased from 700 to more than 1200 during the past three years. Several options for submission of single probes or entire probe sets, even prior to publication of newly developed probes, should further contribute to keeping probeBase an up-to-date and useful resource. probeBase is freely accessible at . Email correspondence can be addressed to probebase@microbial-ecology.net. Oxford University Press 2007-01 2006-11-11 /pmc/articles/PMC1669758/ /pubmed/17099228 http://dx.doi.org/10.1093/nar/gkl856 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Loy, Alexander Maixner, Frank Wagner, Michael Horn, Matthias probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title | probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title_full | probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title_fullStr | probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title_full_unstemmed | probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title_short | probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 |
title_sort | probebase—an online resource for rrna-targeted oligonucleotide probes: new features 2007 |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669758/ https://www.ncbi.nlm.nih.gov/pubmed/17099228 http://dx.doi.org/10.1093/nar/gkl856 |
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