PigGIS: Pig Genomic Informatics System

Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of se...

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Detalles Bibliográficos
Autores principales: Ruan, Jue, Guo, Yiran, Li, Heng, Hu, Yafeng, Song, Fei, Huang, Xin, Kristiensen, Karsten, Bolund, Lars, Wang, Jun
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669765/
https://www.ncbi.nlm.nih.gov/pubmed/17090590
http://dx.doi.org/10.1093/nar/gkl808
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author Ruan, Jue
Guo, Yiran
Li, Heng
Hu, Yafeng
Song, Fei
Huang, Xin
Kristiensen, Karsten
Bolund, Lars
Wang, Jun
author_facet Ruan, Jue
Guo, Yiran
Li, Heng
Hu, Yafeng
Song, Fei
Huang, Xin
Kristiensen, Karsten
Bolund, Lars
Wang, Jun
author_sort Ruan, Jue
collection PubMed
description Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at and .
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spelling pubmed-16697652007-02-22 PigGIS: Pig Genomic Informatics System Ruan, Jue Guo, Yiran Li, Heng Hu, Yafeng Song, Fei Huang, Xin Kristiensen, Karsten Bolund, Lars Wang, Jun Nucleic Acids Res Articles Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at and . Oxford University Press 2007-01 2006-11-07 /pmc/articles/PMC1669765/ /pubmed/17090590 http://dx.doi.org/10.1093/nar/gkl808 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Ruan, Jue
Guo, Yiran
Li, Heng
Hu, Yafeng
Song, Fei
Huang, Xin
Kristiensen, Karsten
Bolund, Lars
Wang, Jun
PigGIS: Pig Genomic Informatics System
title PigGIS: Pig Genomic Informatics System
title_full PigGIS: Pig Genomic Informatics System
title_fullStr PigGIS: Pig Genomic Informatics System
title_full_unstemmed PigGIS: Pig Genomic Informatics System
title_short PigGIS: Pig Genomic Informatics System
title_sort piggis: pig genomic informatics system
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669765/
https://www.ncbi.nlm.nih.gov/pubmed/17090590
http://dx.doi.org/10.1093/nar/gkl808
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AT huyafeng piggispiggenomicinformaticssystem
AT songfei piggispiggenomicinformaticssystem
AT huangxin piggispiggenomicinformaticssystem
AT kristiensenkarsten piggispiggenomicinformaticssystem
AT bolundlars piggispiggenomicinformaticssystem
AT wangjun piggispiggenomicinformaticssystem

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