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The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction

We report a novel release of the GermOnline knowledgebase covering genes relevant for the cell cycle, gametogenesis and fertility. GermOnline was extended into a cross-species systems browser including information on DNA sequence annotation, gene expression and the function of gene products. The dat...

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Detalles Bibliográficos
Autores principales: Gattiker, Alexandre, Niederhauser-Wiederkehr, Christa, Moore, James, Hermida, Leandro, Primig, Michael
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1751528/
https://www.ncbi.nlm.nih.gov/pubmed/17145711
http://dx.doi.org/10.1093/nar/gkl957
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author Gattiker, Alexandre
Niederhauser-Wiederkehr, Christa
Moore, James
Hermida, Leandro
Primig, Michael
author_facet Gattiker, Alexandre
Niederhauser-Wiederkehr, Christa
Moore, James
Hermida, Leandro
Primig, Michael
author_sort Gattiker, Alexandre
collection PubMed
description We report a novel release of the GermOnline knowledgebase covering genes relevant for the cell cycle, gametogenesis and fertility. GermOnline was extended into a cross-species systems browser including information on DNA sequence annotation, gene expression and the function of gene products. The database covers eight model organisms and Homo sapiens, for which complete genome annotation data are available. The database is now built around a sophisticated genome browser (Ensembl), our own microarray information management and annotation system (MIMAS) used to extensively describe experimental data obtained with high-density oligonucleotide microarrays (GeneChips) and a comprehensive system for online editing of database entries (MediaWiki). The RNA data include results from classical microarrays as well as tiling arrays that yield information on RNA expression levels, transcript start sites and lengths as well as exon composition. Members of the research community are solicited to help GermOnline curators keep database entries on genes and gene products complete and accurate. The database is accessible at .
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spelling pubmed-17515282007-02-22 The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction Gattiker, Alexandre Niederhauser-Wiederkehr, Christa Moore, James Hermida, Leandro Primig, Michael Nucleic Acids Res Articles We report a novel release of the GermOnline knowledgebase covering genes relevant for the cell cycle, gametogenesis and fertility. GermOnline was extended into a cross-species systems browser including information on DNA sequence annotation, gene expression and the function of gene products. The database covers eight model organisms and Homo sapiens, for which complete genome annotation data are available. The database is now built around a sophisticated genome browser (Ensembl), our own microarray information management and annotation system (MIMAS) used to extensively describe experimental data obtained with high-density oligonucleotide microarrays (GeneChips) and a comprehensive system for online editing of database entries (MediaWiki). The RNA data include results from classical microarrays as well as tiling arrays that yield information on RNA expression levels, transcript start sites and lengths as well as exon composition. Members of the research community are solicited to help GermOnline curators keep database entries on genes and gene products complete and accurate. The database is accessible at . Oxford University Press 2007-01 2006-12-01 /pmc/articles/PMC1751528/ /pubmed/17145711 http://dx.doi.org/10.1093/nar/gkl957 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Gattiker, Alexandre
Niederhauser-Wiederkehr, Christa
Moore, James
Hermida, Leandro
Primig, Michael
The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title_full The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title_fullStr The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title_full_unstemmed The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title_short The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
title_sort germonline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1751528/
https://www.ncbi.nlm.nih.gov/pubmed/17145711
http://dx.doi.org/10.1093/nar/gkl957
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