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A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis)
We obtained the complete mitochondrial genome of U.thibetanus mupinensis by DNA sequencing based on the PCR fragments of 18 primers we designed. The results indicate that the mtDNA is 16 868 bp in size, encodes 13 protein genes, 22 tRNA genes, and 2 rRNA genes, with an overall H-strand base composit...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Ivyspring International Publisher
2006
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1752227/ https://www.ncbi.nlm.nih.gov/pubmed/17205108 |
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author | Hou, Wan-ru Chen, Yu Wu, Xia Hu, Jin-chu Peng, Zheng-song Yang, Jung Tang, Zong-xiang Zhou, Cai-Quan Li, Yu-ming Yang, Shi-kui Du, Yu-jie Kong, Ling-lu Ren, Zheng-long Zhang, Huai-yu Shuai, Su-rong |
author_facet | Hou, Wan-ru Chen, Yu Wu, Xia Hu, Jin-chu Peng, Zheng-song Yang, Jung Tang, Zong-xiang Zhou, Cai-Quan Li, Yu-ming Yang, Shi-kui Du, Yu-jie Kong, Ling-lu Ren, Zheng-long Zhang, Huai-yu Shuai, Su-rong |
author_sort | Hou, Wan-ru |
collection | PubMed |
description | We obtained the complete mitochondrial genome of U.thibetanus mupinensis by DNA sequencing based on the PCR fragments of 18 primers we designed. The results indicate that the mtDNA is 16 868 bp in size, encodes 13 protein genes, 22 tRNA genes, and 2 rRNA genes, with an overall H-strand base composition of 31.2% A, 25.4% C, 15.5% G and 27.9% T. The sequence of the control region (CR) located between tRNA-Pro and tRNA-Phe is 1422 bp in size, consists of 8.43% of the whole genome, GC content is 51.9% and has a 6bp tandem repeat and two 10bp tandem repeats identified by using the Tandem Repeats Finder. U. thibetanus mupinensis mitochondrial genome shares high similarity with those of three other Ursidae: U. americanus (91.46%), U. arctos (89.25%) and U. maritimus (87.66%). |
format | Text |
id | pubmed-1752227 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2006 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-17522272007-01-04 A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) Hou, Wan-ru Chen, Yu Wu, Xia Hu, Jin-chu Peng, Zheng-song Yang, Jung Tang, Zong-xiang Zhou, Cai-Quan Li, Yu-ming Yang, Shi-kui Du, Yu-jie Kong, Ling-lu Ren, Zheng-long Zhang, Huai-yu Shuai, Su-rong Int J Biol Sci Research Paper We obtained the complete mitochondrial genome of U.thibetanus mupinensis by DNA sequencing based on the PCR fragments of 18 primers we designed. The results indicate that the mtDNA is 16 868 bp in size, encodes 13 protein genes, 22 tRNA genes, and 2 rRNA genes, with an overall H-strand base composition of 31.2% A, 25.4% C, 15.5% G and 27.9% T. The sequence of the control region (CR) located between tRNA-Pro and tRNA-Phe is 1422 bp in size, consists of 8.43% of the whole genome, GC content is 51.9% and has a 6bp tandem repeat and two 10bp tandem repeats identified by using the Tandem Repeats Finder. U. thibetanus mupinensis mitochondrial genome shares high similarity with those of three other Ursidae: U. americanus (91.46%), U. arctos (89.25%) and U. maritimus (87.66%). Ivyspring International Publisher 2006-12-23 /pmc/articles/PMC1752227/ /pubmed/17205108 Text en © Ivyspring International Publisher. This is an open access article. Reproduction is permitted for personal, noncommerical use, provided that the article is in whole, unmodified, and properly cited. |
spellingShingle | Research Paper Hou, Wan-ru Chen, Yu Wu, Xia Hu, Jin-chu Peng, Zheng-song Yang, Jung Tang, Zong-xiang Zhou, Cai-Quan Li, Yu-ming Yang, Shi-kui Du, Yu-jie Kong, Ling-lu Ren, Zheng-long Zhang, Huai-yu Shuai, Su-rong A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title | A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title_full | A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title_fullStr | A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title_full_unstemmed | A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title_short | A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis) |
title_sort | complete mitochondrial genome sequence of asian black bear sichuan subspecies (ursus thibetanus mupinensis) |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1752227/ https://www.ncbi.nlm.nih.gov/pubmed/17205108 |
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