PEDANT genome database: 10 years online

The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Java™ allows for more efficient navigation of the genome data, ext...

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Detalles Bibliográficos
Autores principales: Riley, M. Louise, Schmidt, Thorsten, Artamonova, Irena I., Wagner, Christian, Volz, Andreas, Heumann, Klaus, Mewes, Hans-Werner, Frishman, Dmitrij
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1761421/
https://www.ncbi.nlm.nih.gov/pubmed/17148486
http://dx.doi.org/10.1093/nar/gkl1005
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author Riley, M. Louise
Schmidt, Thorsten
Artamonova, Irena I.
Wagner, Christian
Volz, Andreas
Heumann, Klaus
Mewes, Hans-Werner
Frishman, Dmitrij
author_facet Riley, M. Louise
Schmidt, Thorsten
Artamonova, Irena I.
Wagner, Christian
Volz, Andreas
Heumann, Klaus
Mewes, Hans-Werner
Frishman, Dmitrij
author_sort Riley, M. Louise
collection PubMed
description The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Java™ allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at .
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spelling pubmed-17614212007-02-22 PEDANT genome database: 10 years online Riley, M. Louise Schmidt, Thorsten Artamonova, Irena I. Wagner, Christian Volz, Andreas Heumann, Klaus Mewes, Hans-Werner Frishman, Dmitrij Nucleic Acids Res Articles The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Java™ allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at . Oxford University Press 2007-01 2006-12-05 /pmc/articles/PMC1761421/ /pubmed/17148486 http://dx.doi.org/10.1093/nar/gkl1005 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Riley, M. Louise
Schmidt, Thorsten
Artamonova, Irena I.
Wagner, Christian
Volz, Andreas
Heumann, Klaus
Mewes, Hans-Werner
Frishman, Dmitrij
PEDANT genome database: 10 years online
title PEDANT genome database: 10 years online
title_full PEDANT genome database: 10 years online
title_fullStr PEDANT genome database: 10 years online
title_full_unstemmed PEDANT genome database: 10 years online
title_short PEDANT genome database: 10 years online
title_sort pedant genome database: 10 years online
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1761421/
https://www.ncbi.nlm.nih.gov/pubmed/17148486
http://dx.doi.org/10.1093/nar/gkl1005
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AT volzandreas pedantgenomedatabase10yearsonline
AT heumannklaus pedantgenomedatabase10yearsonline
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