Cargando…

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

BACKGROUND: Mammalian antimicrobial peptides (AMPs) are effectors of the innate immune response. A multitude of signals coming from pathways of mammalian pathogen/pattern recognition receptors and other proteins affect the expression of AMP-coding genes (AMPcgs). For many AMPcgs the promoter element...

Descripción completa

Detalles Bibliográficos
Autores principales:	Brahmachary, Manisha, Schönbach, Christian, Yang, Liang, Huang, Enli, Tan, Sin Lam, Chowdhary, Rajesh, Krishnan, SPT, Lin, Chin-Yo, Hume, David A, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Bajic, Vladimir B
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1764486/ https://www.ncbi.nlm.nih.gov/pubmed/17254313 http://dx.doi.org/10.1186/1471-2105-7-S5-S8

Ejemplares similares

Mice and Men: Their Promoter Properties
por: Bajic, Vladimir B, et al.
Publicado: (2006)

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur
por: Schaefer, Ulf, et al.
Publicado: (2010)

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
por: Ponjavic, Jasmina, et al.
Publicado: (2006)

Heterotachy in Mammalian Promoter Evolution
por: Taylor, Martin S, et al.
Publicado: (2006)

A Method for Similarity Search of Genomic Positional Expression Using CAGE
por: Seno, Shigeto, et al.
Publicado: (2006)

Pseudo–Messenger RNA: Phantoms of the Transcriptome
por: Frith, Martin C, et al.
Publicado: (2006)

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
por: Kawaji, Hideya, et al.
Publicado: (2006)

A Simple Physical Model Predicts Small Exon Length Variations
por: Chern, Tzu-Ming, et al.
Publicado: (2006)

Dynamic usage of transcription start sites within core promoters
por: Kawaji, Hideya, et al.
Publicado: (2006)

Genome Network and FANTOM3: Assessing the Complexity of the Transcriptome
por: Hayashizaki, Yoshihide, et al.
Publicado: (2006)

Beyond the FANTOM4
por: Suzuki, Harukazu, et al.
Publicado: (2010)

Hidden layers of human small RNAs
por: Kawaji, Hideya, et al.
Publicado: (2008)

The Abundance of Short Proteins in the Mammalian Proteome
por: Frith, Martin C, et al.
Publicado: (2006)

LOCATE: a mouse protein subcellular localization database
por: Fink, J. Lynn, et al.
Publicado: (2006)

Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs
por: Furuno, Masaaki, et al.
Publicado: (2006)

Differential Use of Signal Peptides and Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units
por: Davis, Melissa J, et al.
Publicado: (2006)

Molecular docking analysis of 2009-H1N1 and 2004-H5N1 influenza virus HLA-B*4405-restricted HA epitope candidates: implications for TCR cross-recognition and vaccine development
por: Su, Chinh TT, et al.
Publicado: (2013)

Simplified ontologies allowing comparison of developmental mammalian gene expression
por: Kruger, Adele, et al.
Publicado: (2007)

MOIRAI: a compact workflow system for CAGE analysis
por: Hasegawa, Akira, et al.
Publicado: (2014)

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types
por: Kawaji, Hideya, et al.
Publicado: (2017)

Large-scale clustering of CAGE tag expression data
por: Shimokawa, Kazuro, et al.
Publicado: (2007)

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi
por: Franzén, Oscar, et al.
Publicado: (2011)

CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts
por: Katayama, Shintaro, et al.
Publicado: (2007)

Complex Loci in Human and Mouse Genomes
por: Engström, Pär G, et al.
Publicado: (2006)

Alternate transcription of the Toll-like receptor signaling cascade
por: Wells, Christine A, et al.
Publicado: (2006)

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
por: Haberle, Vanja, et al.
Publicado: (2015)

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3
por: Usui, Kengo, et al.
Publicado: (2005)

Genetic control of the innate immune response
por: Wells, Christine A, et al.
Publicado: (2003)

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
por: Harbers, Matthias, et al.
Publicado: (2013)

Context-Specific Protein Network Miner – An Online System for Exploring Context-Specific Protein Interaction Networks from the Literature
por: Chowdhary, Rajesh, et al.
Publicado: (2012)

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
por: Balwierz, Piotr J, et al.
Publicado: (2009)

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases
por: Forrest, Alistair RR, et al.
Publicado: (2006)

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements
por: Creanza, Teresa M, et al.
Publicado: (2009)

TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome
por: Jenjaroenpun, Piroon, et al.
Publicado: (2009)

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
por: Kratz, Anton, et al.
Publicado: (2010)

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE
por: Vitezic, Morana, et al.
Publicado: (2010)

Systematic classification of non-coding RNAs by epigenomic similarity
por: Dozmorov, Mikhail G, et al.
Publicado: (2013)

MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis
por: Kulyté, Agné, et al.
Publicado: (2019)

Long non-coding RNA modifies chromatin: Epigenetic silencing by long non-coding RNAs
por: Saxena, Alka, et al.
Publicado: (2011)

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
por: Kawaji, Hideya, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_lq8o48qa6kjc329ggdtumnju6o