Cargando…

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array

BACKGROUND: Alternative splicing is a mechanism for increasing protein diversity by excluding or including exons during post-transcriptional processing. Alternatively spliced proteins are particularly relevant in oncology since they may contribute to the etiology of cancer, provide selective drug ta...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gardina, Paul J, Clark, Tyson A, Shimada, Brian, Staples, Michelle K, Yang, Qing, Veitch, James, Schweitzer, Anthony, Awad, Tarif, Sugnet, Charles, Dee, Suzanne, Davies, Christopher, Williams, Alan, Turpaz, Yaron
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1769375/ https://www.ncbi.nlm.nih.gov/pubmed/17192196 http://dx.doi.org/10.1186/1471-2164-7-325

Ejemplares similares

Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays
por: Gardina, Paul J, et al.
Publicado: (2008)

Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays
por: Kechris, Katerina, et al.
Publicado: (2008)

Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis
por: Whistler, Toni, et al.
Publicado: (2010)

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
por: Das, Debopriya, et al.
Publicado: (2007)

Identifying Alternative Hyper-Splicing Signatures in MG-Thymoma by Exon Arrays
por: Soreq, Lilach, et al.
Publicado: (2008)

Overestimation of alternative splicing caused by variable probe characteristics in exon arrays
por: Gaidatzis, Dimos, et al.
Publicado: (2009)

Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays
por: Sugnet, Charles W, et al.
Publicado: (2006)

Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer
por: Xi, Liqiang, et al.
Publicado: (2008)

Discovery of tissue-specific exons using comprehensive human exon microarrays
por: Clark, Tyson A, et al.
Publicado: (2007)

Affy exon tissues: exon levels in normal tissues in human, mouse and rat
por: Pohl, Andrew A., et al.
Publicado: (2009)

FIRMA: a method for detection of alternative splicing from exon array data
por: Purdom, E., et al.
Publicado: (2008)

Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants
por: Chen, Ping, et al.
Publicado: (2011)

Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam
por: Takahashi, Aya
Publicado: (2009)

The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model
por: Van Moerbeke, Marijke, et al.
Publicado: (2018)

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing
por: Cereda, Matteo, et al.
Publicado: (2014)

Alternative Splicing and Transcriptome Profiling of Experimental Autoimmune Encephalomyelitis Using Genome-Wide Exon Arrays
por: Gillett, Alan, et al.
Publicado: (2009)

Comparison of Two Methods for Detecting Alternative Splice Variants Using GeneChip(®) Exon Arrays
por: Fan, Wenhong, et al.
Publicado: (2011)

Tau exon 10 alternative splicing and tauopathies
por: Liu, Fei, et al.
Publicado: (2008)

Recognition of Unknown Conserved Alternatively Spliced Exons
por: Ohler, Uwe, et al.
Publicado: (2005)

Syntrophin binds to an alternatively spliced exon of dystrophin
Publicado: (1995)

Evolution of Exon-Intron Structure and Alternative Splicing
por: Koralewski, Tomasz E., et al.
Publicado: (2011)

The importance of DNA methylation of exons on alternative splicing
por: Shayevitch, Ronna, et al.
Publicado: (2018)

Dissecting an alternative splicing analysis workflow for GeneChip(® )Exon 1.0 ST Affymetrix arrays
por: Della Beffa, Cristina, et al.
Publicado: (2008)

REMAS: a new regression model to identify alternative splicing events from exon array data
por: Zheng, Hao, et al.
Publicado: (2009)

Protein Modularity of Alternatively Spliced Exons Is Associated with Tissue-Specific Regulation of Alternative Splicing
por: Xing, Yi, et al.
Publicado: (2005)

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
por: Llorian, Miriam, et al.
Publicado: (2010)

The Emergence of Alternative 3′ and 5′ Splice Site Exons from Constitutive Exons
por: Koren, Eli, et al.
Publicado: (2007)

Alternative splicing of apoptosis-related genes in imatinib-treated K562 cells identified by exon array analysis
por: LIU, JING, et al.
Publicado: (2011)

Mutations primarily alter the inclusion of alternatively spliced exons
por: Baeza-Centurion, Pablo, et al.
Publicado: (2020)

Tandem Exon Duplications Expanding the Alternative Splicing Repertoire
por: Ivanov, T. M., et al.
Publicado: (2022)

Splice site proximity influences alternative exon definition
por: Carranza, Francisco, et al.
Publicado: (2022)

Evolution of Alternative Splicing Regulation: Changes in Predicted Exonic Splicing Regulators Are Not Associated with Changes in Alternative Splicing Levels in Primates
por: Irimia, Manuel, et al.
Publicado: (2009)

Tracking the evolution of alternatively spliced exons within the Dscam family
por: Crayton, Mack E, et al.
Publicado: (2006)

Assessing the number of ancestral alternatively spliced exons in the human genome
por: Sorek, Rotem, et al.
Publicado: (2006)

Differentiated evolutionary rates in alternative exons and the implications for splicing regulation
por: Plass, Mireya, et al.
Publicado: (2006)

Transgene regulation in plants by alternative splicing of a suicide exon
por: Hickey, Scott F., et al.
Publicado: (2012)

Sequence and Evolutionary Features for the Alternatively Spliced Exons of Eukaryotic Genes
por: Chen, Shi-Yi, et al.
Publicado: (2019)

Alternative splicing of CD200 is regulated by an exonic splicing enhancer and SF2/ASF
por: Chen, Zhiqi, et al.
Publicado: (2010)

Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status
por: Guo, Xiang, et al.
Publicado: (2011)

Algorithms for differential splicing detection using exon arrays: a comparative assessment
por: Zimmermann, Karin, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_spumnn0qeo8drsrb4tvo7bjoem