Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes

Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, ) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our sy...

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Autores principales: Hirahata, Masaki, Abe, Takashi, Tanaka, Naoto, Kuwana, Yoshikazu, Shigemoto, Yasumasa, Miyazaki, Satoru, Suzuki, Yoshiyuki, Sugawara, Hideaki
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781101/
https://www.ncbi.nlm.nih.gov/pubmed/17158166
http://dx.doi.org/10.1093/nar/gkl1004
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author Hirahata, Masaki
Abe, Takashi
Tanaka, Naoto
Kuwana, Yoshikazu
Shigemoto, Yasumasa
Miyazaki, Satoru
Suzuki, Yoshiyuki
Sugawara, Hideaki
author_facet Hirahata, Masaki
Abe, Takashi
Tanaka, Naoto
Kuwana, Yoshikazu
Shigemoto, Yasumasa
Miyazaki, Satoru
Suzuki, Yoshiyuki
Sugawara, Hideaki
author_sort Hirahata, Masaki
collection PubMed
description Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, ) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at .
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spelling pubmed-17811012007-02-22 Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes Hirahata, Masaki Abe, Takashi Tanaka, Naoto Kuwana, Yoshikazu Shigemoto, Yasumasa Miyazaki, Satoru Suzuki, Yoshiyuki Sugawara, Hideaki Nucleic Acids Res Articles Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, ) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at . Oxford University Press 2007-01 2006-12-07 /pmc/articles/PMC1781101/ /pubmed/17158166 http://dx.doi.org/10.1093/nar/gkl1004 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Hirahata, Masaki
Abe, Takashi
Tanaka, Naoto
Kuwana, Yoshikazu
Shigemoto, Yasumasa
Miyazaki, Satoru
Suzuki, Yoshiyuki
Sugawara, Hideaki
Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title_full Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title_fullStr Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title_full_unstemmed Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title_short Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
title_sort genome information broker for viruses (gib-v): database for comparative analysis of virus genomes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781101/
https://www.ncbi.nlm.nih.gov/pubmed/17158166
http://dx.doi.org/10.1093/nar/gkl1004
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