Cargando…

ProCAT: a data analysis approach for protein microarrays

Protein microarrays provide a versatile method for the analysis of many protein biochemical activities. Existing DNA microarray analytical methods do not translate to protein microarrays due to differences between the technologies. Here we report a new approach, ProCAT, which corrects for background...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhu, Xiaowei, Gerstein, Mark, Snyder, Michael
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2006
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794587/ https://www.ncbi.nlm.nih.gov/pubmed/17109749 http://dx.doi.org/10.1186/gb-2006-7-11-r110

Ejemplares similares

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool
por: Yu, Haiyuan, et al.
Publicado: (2007)

BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments
por: Wang, Lu-yong, et al.
Publicado: (2006)

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification
por: Royce, Thomas E., et al.
Publicado: (2007)

Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data
por: Lee, Chang-Kyu, et al.
Publicado: (2008)

The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics
por: Gianoulis, Tara A, et al.
Publicado: (2011)

Celsius: a community resource for Affymetrix microarray data
por: Day, Allen, et al.
Publicado: (2007)

The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
por: Eichler, Gabriel S, et al.
Publicado: (2007)

Fuzzy Logic for Elimination of Redundant Information of Microarray Data
por: Huerta, Edmundo Bonilla, et al.
Publicado: (2008)

Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae
por: Seringhaus, Michael, et al.
Publicado: (2006)

Consolidated strategy for the analysis of microarray spike-in data
por: McCall, Matthew N., et al.
Publicado: (2008)

Tilescope: online analysis pipeline for high-density tiling microarray data
por: Zhang, Zhengdong D, et al.
Publicado: (2007)

Application of independent component analysis to microarrays
por: Lee, Su-In, et al.
Publicado: (2003)

RiboCAT: a new capillary electrophoresis data analysis tool for nucleic acid probing
por: Cantara, William A., et al.
Publicado: (2017)

Model selection and efficiency testing for normalization of cDNA microarray data
por: Futschik, Matthias, et al.
Publicado: (2004)

A classification based framework for quantitative description of large-scale microarray data
por: Sangurdekar, Dipen P, et al.
Publicado: (2006)

Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients
por: Spakowicz, Daniel, et al.
Publicado: (2020)

Inferring transcriptional modules from ChIP-chip, motif and microarray data
por: Lemmens, Karen, et al.
Publicado: (2006)

Filtering genes to improve sensitivity in oligonucleotide microarray data analysis
por: Calza, Stefano, et al.
Publicado: (2007)

Two-color, rolling-circle amplification on antibody microarrays for sensitive, multiplexed serum-protein measurements
por: Zhou, Heping, et al.
Publicado: (2004)

An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome
por: Cheng, Chao, et al.
Publicado: (2015)

OrthoClust: an orthology-based network framework for clustering data across multiple species
por: Yan, Koon-Kiu, et al.
Publicado: (2014)

Correction of technical bias in clinical microarray data improves concordance with known biological information
por: Eklund, Aron C, et al.
Publicado: (2008)

Gel-based oligonucleotide microarray approach to analyze protein–ssDNA binding specificity
por: Zasedateleva, Olga A., et al.
Publicado: (2008)

Sequence specificity of single-stranded DNA-binding proteins: a novel DNA microarray approach
por: Morgan, Hugh P., et al.
Publicado: (2007)

An approach to compare genome tiling microarray and MPSS sequencing data for transcript mapping
por: Sasidharan, Rajkumar, et al.
Publicado: (2009)

Exploratory differential gene expression analysis in microarray experiments with no or limited replication
por: Loguinov, Alexander V, et al.
Publicado: (2004)

A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes
por: Harrison, Paul M, et al.
Publicado: (2003)

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors
por: Cheng, Chao, et al.
Publicado: (2011)

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
por: Ojala, Kalle A, et al.
Publicado: (2011)

Microarray-based resequencing of multiple Bacillus anthracis isolates
por: Zwick, Michael E, et al.
Publicado: (2005)

A Network Partition Algorithm for Mining Gene Functional Modules of Colon Cancer from DNA Microarray Data
por: Ruan, Xiao-Gang, et al.
Publicado: (2006)

Protocols for the assurance of microarray data quality and process control
por: Burgoon, L. D., et al.
Publicado: (2005)

MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework
por: Harmanci, Arif, et al.
Publicado: (2014)

Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG)
por: Lee, Inhan, et al.
Publicado: (2008)

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
por: Doniger, Scott W, et al.
Publicado: (2003)

RAD marker microarrays enable rapid mapping of zebrafish mutations
por: Miller, Michael R, et al.
Publicado: (2007)

Optimization and clinical validation of a pathogen detection microarray
por: Wong, Christopher W, et al.
Publicado: (2007)

Real-time DNA microarray analysis
por: Hassibi, Arjang, et al.
Publicado: (2009)

Model-based variance-stabilizing transformation for Illumina microarray data
por: Lin, Simon M., et al.
Publicado: (2008)

Genome-wide estimation of transcript concentrations from spotted cDNA microarray data
por: Frigessi, Arnoldo, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_drckaqnqk4j60c0dfsnfl39c4c