xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and m...

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Detalles Bibliográficos
Autores principales: Schlueter, Shannon D, Wilkerson, Matthew D, Dong, Qunfeng, Brendel, Volker
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2006
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794590/
https://www.ncbi.nlm.nih.gov/pubmed/17116260
http://dx.doi.org/10.1186/gb-2006-7-11-r111
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author Schlueter, Shannon D
Wilkerson, Matthew D
Dong, Qunfeng
Brendel, Volker
author_facet Schlueter, Shannon D
Wilkerson, Matthew D
Dong, Qunfeng
Brendel, Volker
author_sort Schlueter, Shannon D
collection PubMed
description The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and microarray probes, but the software supports inclusion of any property that can be associated with a genomic location. The xGDB distribution and user support utilities are available online at the xGDB project website, http://xgdb.sourceforge.net/.
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spelling pubmed-17945902007-02-08 xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features Schlueter, Shannon D Wilkerson, Matthew D Dong, Qunfeng Brendel, Volker Genome Biol Software The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and microarray probes, but the software supports inclusion of any property that can be associated with a genomic location. The xGDB distribution and user support utilities are available online at the xGDB project website, http://xgdb.sourceforge.net/. BioMed Central 2006 2006-11-20 /pmc/articles/PMC1794590/ /pubmed/17116260 http://dx.doi.org/10.1186/gb-2006-7-11-r111 Text en Copyright © 2006 Schlueter et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Schlueter, Shannon D
Wilkerson, Matthew D
Dong, Qunfeng
Brendel, Volker
xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title_full xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title_fullStr xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title_full_unstemmed xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title_short xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features
title_sort xgdb: open-source computational infrastructure for the integrated evaluation and analysis of genome features
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794590/
https://www.ncbi.nlm.nih.gov/pubmed/17116260
http://dx.doi.org/10.1186/gb-2006-7-11-r111
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AT dongqunfeng xgdbopensourcecomputationalinfrastructurefortheintegratedevaluationandanalysisofgenomefeatures
AT brendelvolker xgdbopensourcecomputationalinfrastructurefortheintegratedevaluationandanalysisofgenomefeatures

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