Cargando…

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

BACKGROUND: Thanks to the large amount of signal contained in genome-wide sequence alignments, phylogenomic analyses are converging towards highly supported trees. However, high statistical support does not imply that the tree is accurate. Systematic errors, such as the Long Branch Attraction (LBA)...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lartillot, Nicolas, Brinkmann, Henner, Philippe, Hervé
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1796613/ https://www.ncbi.nlm.nih.gov/pubmed/17288577 http://dx.doi.org/10.1186/1471-2148-7-S1-S4

Ejemplares similares

Heterotachy and long-branch attraction in phylogenetics
por: Philippe, Hervé, et al.
Publicado: (2005)

Compositionally Constrained Sites Drive Long-Branch Attraction
por: Szánthó, Lénárd L, et al.
Publicado: (2023)

Mitochondrial phylogenomics of Acanthocephala: nucleotide alignments produce long-branch attraction artefacts
por: Gao, Jin-Wei, et al.
Publicado: (2022)

Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts
por: Zou, Hong, et al.
Publicado: (2020)

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package
por: Rodrigue, Nicolas, et al.
Publicado: (2014)

Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes
por: Li, Teng, et al.
Publicado: (2014)

Scalable Empirical Mixture Models That Account for Across-Site Compositional Heterogeneity
por: Schrempf, Dominik, et al.
Publicado: (2020)

Reconstructing the History of Variation in Effective Population Size along Phylogenies
por: Brevet, Mathieu, et al.
Publicado: (2021)

Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model
por: Rodrigue, Nicolas, et al.
Publicado: (2017)

Strepsiptera, Phylogenomics and the Long Branch Attraction Problem
por: Boussau, Bastien, et al.
Publicado: (2014)

Artefacts found at the Cessy's archeological site
por: Jean-Luc Caron
Publicado: (1998)

Artefacts found at the Cessy's archeological site
por: Jean-Luc Caron
Publicado: (1998)

Artefacts found at the Cessy's archeological site
por: Jean-Luc Caron
Publicado: (1998)

Artefacts found at the Cessy's archeological site
por: Jean-Luc Caron
Publicado: (1998)

Artefacts found at the Cessy's archeological site
por: Jean-Luc Caron
Publicado: (1998)

Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
por: Kolaczkowski, Bryan, et al.
Publicado: (2009)

Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
por: Kolaczkowski, Bryan, et al.
Publicado: (2010)

Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
por: Kolaczkowski, Bryan, et al.
Publicado: (2010)

Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
por: Kolaczkowski, Bryan, et al.
Publicado: (2010)

On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations
por: Sangaralingam, Ajanthah, et al.
Publicado: (2010)

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
por: Stefanović, Saša, et al.
Publicado: (2004)

ANIMAL MODEL FOR INCREASED RETRIEVAL OF UNPLEASANT MEMORIES : FACT OR ARTEFACT?
por: Andrade, Chittaranjan
Publicado: (2000)

Artefacts in histopathology
por: Chatterjee, Shailja
Publicado: (2014)

Artefact Profiling: Panomics Approaches for Understanding the Materiality of Written Artefacts
por: Creydt, Marina, et al.
Publicado: (2023)

Atrial fibrillation is not just an artefact in the ICU
por: Seguin, Philippe, et al.
Publicado: (2010)

Evaluation of the models handling heterotachy in phylogenetic inference
por: Zhou, Yan, et al.
Publicado: (2007)

The Infirmary Branch and Its Attractions for the Newly Qualified
Publicado: (1920)

Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)
por: Qu, Xiao-Jian, et al.
Publicado: (2017)

Archaeology of algorithmic artefacts
por: Link, David
Publicado: (2016)

Artefacts and Family Resemblance
por: Garbacz, Pawel
Publicado: (2013)

Multiphoton intravital microscopy in small animals: motion artefact challenges and technical solutions
por: SOULET, D., et al.
Publicado: (2020)

Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale
por: Latrille, Thibault, et al.
Publicado: (2023)

A Bayesian Mutation–Selection Framework for Detecting Site-Specific Adaptive Evolution in Protein-Coding Genes
por: Rodrigue, Nicolas, et al.
Publicado: (2020)

Erratum to: A Bayesian mutation-selection framework for detecting site-specific adaptive evolution in protein-coding genes
por: Rodrigue, Nicolas, et al.
Publicado: (2021)

Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of Pseudoscorpions
por: Ontano, Andrew Z, et al.
Publicado: (2021)

Application of RNA-seq for mitogenome reconstruction, and reconsideration of long-branch artifacts in Hemiptera phylogeny
por: Song, Nan, et al.
Publicado: (2016)

Pathological changes or technical artefacts? The problem of the heterogenous databases in COVID-19 CXR image analysis
por: Socha, Marek, et al.
Publicado: (2023)

A maximum likelihood framework for protein design
por: Kleinman, Claudia L, et al.
Publicado: (2006)

Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models
por: Song, Fan, et al.
Publicado: (2016)

Attract Visitors to Your Site
por: MacDonald, Matthew
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_2kc7depip6oeaumgdj71d4ufqp