Cargando…

Single Feature Polymorphism Discovery in Rice

The discovery of nucleotide diversity captured as single feature polymorphism (SFP) by using the expression array is a high-throughput and effective method in detecting genome-wide polymorphism. The efficacy of such method was tested in rice, and the results presented in the paper indicate high sens...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kumar, Rajesh, Qiu, Jing, Joshi, Trupti, Valliyodan, Babu, Xu, Dong, Nguyen, Henry T.
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2007
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1808426/ https://www.ncbi.nlm.nih.gov/pubmed/17372626 http://dx.doi.org/10.1371/journal.pone.0000284

Ejemplares similares

Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response
por: Quach, Truyen N., et al.
Publicado: (2014)

A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies
por: Wang, Juexin, et al.
Publicado: (2015)

Genomic differences between cultivated soybean, G. max and its wild relative G. soja
por: Joshi, Trupti, et al.
Publicado: (2013)

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance
por: Chai, Chenglin, et al.
Publicado: (2015)

SoyDB: a knowledge database of soybean transcription factors
por: Wang, Zheng, et al.
Publicado: (2010)

Landscape of genomic diversity and trait discovery in soybean
por: Valliyodan, Babu, et al.
Publicado: (2016)

SNP discovery by high-throughput sequencing in soybean
por: Wu, Xiaolei, et al.
Publicado: (2010)

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions
por: Song, Li, et al.
Publicado: (2016)

Single-feature polymorphism discovery in the barley transcriptome
por: Rostoks, Nils, et al.
Publicado: (2005)

Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis
por: Patil, Gunvant, et al.
Publicado: (2015)

Single-feature polymorphism discovery by computing probe affinity shape powers
por: Xu, Wayne Wenzhong, et al.
Publicado: (2009)

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays
por: Bernardo, Amy N, et al.
Publicado: (2009)

Comprehensive Analysis of the Soybean (Glycine max) GmLAX Auxin Transporter Gene Family
por: Chai, Chenglin, et al.
Publicado: (2016)

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing
por: Maldonado dos Santos, João Vitor, et al.
Publicado: (2016)

Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding Tolerance
por: Song, Li, et al.
Publicado: (2018)

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction
por: Gill, Mitchell, et al.
Publicado: (2022)

Functional Analysis of Water Stress-Responsive Soybean GmNAC003 and GmNAC004 Transcription Factors in Lateral Root Development in Arabidopsis
por: Quach, Truyen N., et al.
Publicado: (2014)

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
por: Joshi, Trupti, et al.
Publicado: (2012)

PGen: large-scale genomic variations analysis workflow and browser in SoyKB
por: Liu, Yang, et al.
Publicado: (2016)

Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)
por: Wang, Yongqin, et al.
Publicado: (2015)

Identification and characterization of a stachyose synthase gene controlling reduced stachyose content in soybean
por: Qiu, Dan, et al.
Publicado: (2015)

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array
por: Kim, Sung-Hyun, et al.
Publicado: (2009)

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
por: Yamamoto, Toshio, et al.
Publicado: (2010)

Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean
por: Prince, Silvas J, et al.
Publicado: (2015)

Discovery of Single Nucleotide Polymorphisms and Mutations by Pyrosequencing
por: Ronaghi, Mostafa, et al.
Publicado: (2002)

Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries
por: Zeng, Shuai, et al.
Publicado: (2019)

The Late Embryogenesis Abundant Proteins in Soybean: Identification, Expression Analysis, and the Roles of GmLEA4_19 in Drought Stress
por: Guo, Binhui, et al.
Publicado: (2023)

PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean
por: Bui, Thu Giang Thi, et al.
Publicado: (2017)

Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development
por: Song, Li, et al.
Publicado: (2019)

G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers
por: Zeng, Shuai, et al.
Publicado: (2021)

Molecular and genetic bases of heat stress responses in crop plants and breeding for increased resilience and productivity
por: Janni, Michela, et al.
Publicado: (2020)

Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping
por: Do, Tuyen D., et al.
Publicado: (2019)

Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe)
por: Wan, Jinrong, et al.
Publicado: (2015)

Australian Wild Rice Reveals Pre-Domestication Origin of Polymorphism Deserts in Rice Genome
por: Krishnan S., Gopala, et al.
Publicado: (2014)

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum
por: Nelson, James C, et al.
Publicado: (2011)

Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology
por: Pareek, Chandra Shekhar, et al.
Publicado: (2017)

Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean
por: Patil, Gunvant, et al.
Publicado: (2016)

Quantitative assessment of relationship between sequence similarity and function similarity
por: Joshi, Trupti, et al.
Publicado: (2007)

Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice
por: Chai, Chenglin, et al.
Publicado: (2018)

GmBZL3 acts as a major BR signaling regulator through crosstalk with multiple pathways in Glycine max
por: Song, Li, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_edu0ig7489am85kfln2i7u8n02