Cargando…

Recognition of interferon-inducible sites, promoters, and enhancers

BACKGROUND: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes for interferon (IFN) induction appears of interest. IFNs are multi-functional cytokines. Their effects are immunomodulat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ananko, Elena A, Kondrakhin, Yury V, Merkulova, Tatiana I, Kolchanov, Nikolay A
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1810324/ https://www.ncbi.nlm.nih.gov/pubmed/17309789 http://dx.doi.org/10.1186/1471-2105-8-56

Ejemplares similares

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
por: Levitsky, Victor G, et al.
Publicado: (2007)

ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters
por: Vishnevsky, Oleg V., et al.
Publicado: (2005)

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
por: Kochetov, Alex V, et al.
Publicado: (2007)

Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
por: Tsukanov, A.V., et al.
Publicado: (2021)

Regulatory SNPs: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases
por: Degtyareva, Arina O., et al.
Publicado: (2021)

Human Genes Encoding Transcription Factors and Chromatin-Modifying Proteins Have Low Levels of Promoter Polymorphism: A Study of 1000 Genomes Project Data
por: Ignatieva, Elena V., et al.
Publicado: (2015)

The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition
por: Ivanisenko, Timofey V., et al.
Publicado: (2022)

Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset
por: Ignatieva, Elena V., et al.
Publicado: (2014)

Regulatory single nucleotide polymorphisms (rSNPs) at the promoters 1A and 1B of the human APC gene
por: Matveeva, Marina Yu, et al.
Publicado: (2016)

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes
por: Medvedeva, Irina, et al.
Publicado: (2012)

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data
por: Sharipov, Ruslan N., et al.
Publicado: (2020)

GeneNet in 2005
por: Ananko, E. A., et al.
Publicado: (2005)

Leave or Stay: Simulating Motility and Fitness of Microorganisms in Dynamic Aquatic Ecosystems
por: Klimenko, Alexandra, et al.
Publicado: (2021)

A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network
por: Ignatieva, Elena V., et al.
Publicado: (2016)

Genetics at Belyaev Conference – 2017: introductory note
por: Orlov, Yuriy L., et al.
Publicado: (2017)

Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink
por: Manakhov, Andrey D., et al.
Publicado: (2019)

Young «oil site» of the Uzon Caldera as a habitat for unique microbial life
por: Peltek, Sergey E., et al.
Publicado: (2020)

Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study
por: Klimenko, Alexandra Igorevna, et al.
Publicado: (2016)

Splicing Enhancers at Intron–Exon Borders Participate in Acceptor Splice Sites Recognition
por: Kováčová, Tatiana, et al.
Publicado: (2020)

Population size estimation for quality control of ChIP-Seq datasets
por: Kolmykov, Semyon K., et al.
Publicado: (2019)

GTRD: a database on gene transcription regulation—2019 update
por: Yevshin, Ivan, et al.
Publicado: (2019)

Modeling evolution of spatially distributed bacterial communities: a simulation with the haploid evolutionary constructor
por: Klimenko, Alexandra Igorevna, et al.
Publicado: (2015)

Exploring the Genetic Predisposition to Epigenetic Changes in Alzheimer’s Disease
por: Bryzgalov, Leonid O., et al.
Publicado: (2023)

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions
por: Gunbin, Konstantin V, et al.
Publicado: (2009)

A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities
por: Banerjee, A. Raja, et al.
Publicado: (2014)

Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species
por: Medvedev, Kirill E, et al.
Publicado: (2014)

Erratum to: Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study
por: Klimenko, Alexandra Igorevna, et al.
Publicado: (2016)

Viral recognition and the antiviral interferon response
por: Dalskov, Louise, et al.
Publicado: (2023)

SNPs in 3′UTR miRNA Target Sequences Associated with Individual Drug Susceptibility
por: Rykova, Elena, et al.
Publicado: (2022)

How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter
por: Ponomarenko, Mikhail, et al.
Publicado: (2015)

An Experimental Verification of the Predicted Effects of Promoter TATA-Box Polymorphisms Associated with Human Diseases on Interactions between the TATA Boxes and TATA-Binding Protein
por: Savinkova, Ludmila, et al.
Publicado: (2013)

Molecular evolution of cyclin proteins in animals and fungi
por: Gunbin, Konstantin V, et al.
Publicado: (2011)

Rock Microhabitats Provide Suitable Thermal Conditions for Overwintering Insects: A Case Study of the Spongy Moth (Lymantria dispar L.) Population in the Altai Mountains
por: Ananko, Grigory G., et al.
Publicado: (2022)

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain
por: Gunbin, Konstantin V, et al.
Publicado: (2015)

Novel functional variants at the GWAS-implicated loci might confer risk to major depressive disorder, bipolar affective disorder and schizophrenia
por: Bryzgalov, Leonid O., et al.
Publicado: (2018)

Interferon and Interferon Inducers in Protozoal Infections
por: Jahiel, Rene I.
Publicado: (1970)

Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters
por: Arkova, Olga V, et al.
Publicado: (2015)

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data
por: Levitsky, Victor G, et al.
Publicado: (2014)

PDBSite: a database of the 3D structure of protein functional sites
por: Ivanisenko, Vladimir A., et al.
Publicado: (2005)

Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice
por: Ershov, Nikita I., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_5n5cill0dsbj4n4onbd9gslra3