GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

We present GENECODIS, a web-based tool that integrates different sources of information to search for annotations that frequently co-occur in a set of genes and rank them by statistical significance. The analysis of concurrent annotations provides significant information for the biologic interpretat...

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Autores principales: Carmona-Saez, Pedro, Chagoyen, Monica, Tirado, Francisco, Carazo, Jose M, Pascual-Montano, Alberto
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839127/
https://www.ncbi.nlm.nih.gov/pubmed/17204154
http://dx.doi.org/10.1186/gb-2007-8-1-r3
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author Carmona-Saez, Pedro
Chagoyen, Monica
Tirado, Francisco
Carazo, Jose M
Pascual-Montano, Alberto
author_facet Carmona-Saez, Pedro
Chagoyen, Monica
Tirado, Francisco
Carazo, Jose M
Pascual-Montano, Alberto
author_sort Carmona-Saez, Pedro
collection PubMed
description We present GENECODIS, a web-based tool that integrates different sources of information to search for annotations that frequently co-occur in a set of genes and rank them by statistical significance. The analysis of concurrent annotations provides significant information for the biologic interpretation of high-throughput experiments and may outperform the results of standard methods for the functional analysis of gene lists. GENECODIS is publicly available at .
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spelling pubmed-18391272007-03-30 GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists Carmona-Saez, Pedro Chagoyen, Monica Tirado, Francisco Carazo, Jose M Pascual-Montano, Alberto Genome Biol Software We present GENECODIS, a web-based tool that integrates different sources of information to search for annotations that frequently co-occur in a set of genes and rank them by statistical significance. The analysis of concurrent annotations provides significant information for the biologic interpretation of high-throughput experiments and may outperform the results of standard methods for the functional analysis of gene lists. GENECODIS is publicly available at . BioMed Central 2007 2007-01-04 /pmc/articles/PMC1839127/ /pubmed/17204154 http://dx.doi.org/10.1186/gb-2007-8-1-r3 Text en Copyright © 2007 Carmona-Saez et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Carmona-Saez, Pedro
Chagoyen, Monica
Tirado, Francisco
Carazo, Jose M
Pascual-Montano, Alberto
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title_full GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title_fullStr GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title_full_unstemmed GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title_short GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
title_sort genecodis: a web-based tool for finding significant concurrent annotations in gene lists
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839127/
https://www.ncbi.nlm.nih.gov/pubmed/17204154
http://dx.doi.org/10.1186/gb-2007-8-1-r3
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