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Stochastic synchronization of genetic oscillator networks

BACKGROUND: The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore,...

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Detalles Bibliográficos
Autores principales: Li, Chunguang, Chen, Luonan, Aihara, Kazuyuki
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839896/
https://www.ncbi.nlm.nih.gov/pubmed/17408513
http://dx.doi.org/10.1186/1752-0509-1-6
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author Li, Chunguang
Chen, Luonan
Aihara, Kazuyuki
author_facet Li, Chunguang
Chen, Luonan
Aihara, Kazuyuki
author_sort Li, Chunguang
collection PubMed
description BACKGROUND: The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore, it is important to study the effects of noise perturbation on the synchronous dynamics of genetic oscillators. From the synthetic biology viewpoint, it is also important to implement biological systems that minimizing the negative influence of the perturbations. RESULTS: In this paper, based on systems biology approach, we provide a general theoretical result on the synchronization of genetic oscillators with stochastic perturbations. By exploiting the specific properties of many genetic oscillator models, we provide an easy-verified sufficient condition for the stochastic synchronization of coupled genetic oscillators, based on the Lur'e system approach in control theory. A design principle for minimizing the influence of noise is also presented. To demonstrate the effectiveness of our theoretical results, a population of coupled repressillators is adopted as a numerical example. CONCLUSION: In summary, we present an efficient theoretical method for analyzing the synchronization of genetic oscillator networks, which is helpful for understanding and testing the synchronization phenomena in biological organisms. Besides, the results are actually applicable to general oscillator networks.
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spelling pubmed-18398962007-04-02 Stochastic synchronization of genetic oscillator networks Li, Chunguang Chen, Luonan Aihara, Kazuyuki BMC Syst Biol Research Article BACKGROUND: The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore, it is important to study the effects of noise perturbation on the synchronous dynamics of genetic oscillators. From the synthetic biology viewpoint, it is also important to implement biological systems that minimizing the negative influence of the perturbations. RESULTS: In this paper, based on systems biology approach, we provide a general theoretical result on the synchronization of genetic oscillators with stochastic perturbations. By exploiting the specific properties of many genetic oscillator models, we provide an easy-verified sufficient condition for the stochastic synchronization of coupled genetic oscillators, based on the Lur'e system approach in control theory. A design principle for minimizing the influence of noise is also presented. To demonstrate the effectiveness of our theoretical results, a population of coupled repressillators is adopted as a numerical example. CONCLUSION: In summary, we present an efficient theoretical method for analyzing the synchronization of genetic oscillator networks, which is helpful for understanding and testing the synchronization phenomena in biological organisms. Besides, the results are actually applicable to general oscillator networks. BioMed Central 2007-01-09 /pmc/articles/PMC1839896/ /pubmed/17408513 http://dx.doi.org/10.1186/1752-0509-1-6 Text en Copyright © 2007 Li et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Li, Chunguang
Chen, Luonan
Aihara, Kazuyuki
Stochastic synchronization of genetic oscillator networks
title Stochastic synchronization of genetic oscillator networks
title_full Stochastic synchronization of genetic oscillator networks
title_fullStr Stochastic synchronization of genetic oscillator networks
title_full_unstemmed Stochastic synchronization of genetic oscillator networks
title_short Stochastic synchronization of genetic oscillator networks
title_sort stochastic synchronization of genetic oscillator networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839896/
https://www.ncbi.nlm.nih.gov/pubmed/17408513
http://dx.doi.org/10.1186/1752-0509-1-6
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