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A high-throughput method for detection of DNA in chloroplasts using flow cytometry
BACKGROUND: The amount of DNA in the chloroplasts of some plant species has been shown recently to decline dramatically during leaf development. A high-throughput method of DNA detection in chloroplasts is now needed in order to facilitate the further investigation of this process using large number...
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2007
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847512/ https://www.ncbi.nlm.nih.gov/pubmed/17381841 http://dx.doi.org/10.1186/1746-4811-3-5 |
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author | Rowan, Beth A Oldenburg, Delene J Bendich, Arnold J |
author_facet | Rowan, Beth A Oldenburg, Delene J Bendich, Arnold J |
author_sort | Rowan, Beth A |
collection | PubMed |
description | BACKGROUND: The amount of DNA in the chloroplasts of some plant species has been shown recently to decline dramatically during leaf development. A high-throughput method of DNA detection in chloroplasts is now needed in order to facilitate the further investigation of this process using large numbers of tissue samples. RESULTS: The DNA-binding fluorophores 4',6-diamidino-2-phenylindole (DAPI), SYBR Green I (SG), SYTO 42, and SYTO 45 were assessed for their utility in flow cytometric analysis of DNA in Arabidopsis chloroplasts. Fluorescence microscopy and real-time quantitative PCR (qPCR) were used to validate flow cytometry data. We found neither DAPI nor SYTO 45 suitable for flow cytometric analysis of chloroplast DNA (cpDNA) content, but did find changes in cpDNA content during development by flow cytometry using SG and SYTO 42. The latter dye provided more sensitive detection, and the results were similar to those from the fluorescence microscopic analysis. Differences in SYTO 42 fluorescence were found to correlate with differences in cpDNA content as determined by qPCR using three primer sets widely spaced across the chloroplast genome, suggesting that the whole genome undergoes copy number reduction during development, rather than selective reduction/degradation of subgenomic regions. CONCLUSION: Flow cytometric analysis of chloroplasts stained with SYTO 42 is a high-throughput method suitable for determining changes in cpDNA content during development and for sorting chloroplasts on the basis of DNA content. |
format | Text |
id | pubmed-1847512 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-18475122007-04-04 A high-throughput method for detection of DNA in chloroplasts using flow cytometry Rowan, Beth A Oldenburg, Delene J Bendich, Arnold J Plant Methods Methodology BACKGROUND: The amount of DNA in the chloroplasts of some plant species has been shown recently to decline dramatically during leaf development. A high-throughput method of DNA detection in chloroplasts is now needed in order to facilitate the further investigation of this process using large numbers of tissue samples. RESULTS: The DNA-binding fluorophores 4',6-diamidino-2-phenylindole (DAPI), SYBR Green I (SG), SYTO 42, and SYTO 45 were assessed for their utility in flow cytometric analysis of DNA in Arabidopsis chloroplasts. Fluorescence microscopy and real-time quantitative PCR (qPCR) were used to validate flow cytometry data. We found neither DAPI nor SYTO 45 suitable for flow cytometric analysis of chloroplast DNA (cpDNA) content, but did find changes in cpDNA content during development by flow cytometry using SG and SYTO 42. The latter dye provided more sensitive detection, and the results were similar to those from the fluorescence microscopic analysis. Differences in SYTO 42 fluorescence were found to correlate with differences in cpDNA content as determined by qPCR using three primer sets widely spaced across the chloroplast genome, suggesting that the whole genome undergoes copy number reduction during development, rather than selective reduction/degradation of subgenomic regions. CONCLUSION: Flow cytometric analysis of chloroplasts stained with SYTO 42 is a high-throughput method suitable for determining changes in cpDNA content during development and for sorting chloroplasts on the basis of DNA content. BioMed Central 2007-03-23 /pmc/articles/PMC1847512/ /pubmed/17381841 http://dx.doi.org/10.1186/1746-4811-3-5 Text en Copyright © 2007 Rowan et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methodology Rowan, Beth A Oldenburg, Delene J Bendich, Arnold J A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title | A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title_full | A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title_fullStr | A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title_full_unstemmed | A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title_short | A high-throughput method for detection of DNA in chloroplasts using flow cytometry |
title_sort | high-throughput method for detection of dna in chloroplasts using flow cytometry |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847512/ https://www.ncbi.nlm.nih.gov/pubmed/17381841 http://dx.doi.org/10.1186/1746-4811-3-5 |
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