Cargando…
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes
BACKGROUND: Pfam is a general-purpose database of protein domain alignments and profile Hidden Markov Models (HMMs), which is very popular for the annotation of sequence data produced by genome sequencing projects. Pfam provides models that are often very general in terms of the taxa that they cover...
Autores principales: | Alam, Intikhab, Hubbard, Simon J, Oliver, Stephen G, Rattray, Magnus |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1854895/ https://www.ncbi.nlm.nih.gov/pubmed/17425790 http://dx.doi.org/10.1186/1471-2164-8-97 |
Ejemplares similares
-
e-Fungi: a data resource for comparative analysis of fungal genomes
por: Hedeler, Cornelia, et al.
Publicado: (2007) -
Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis
por: Soanes, Darren M., et al.
Publicado: (2008) -
Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection
por: Ghouila, Amel, et al.
Publicado: (2014) -
ConsHMM Atlas: conservation state annotations for major genomes and human genetic variation
por: Arneson, Adriana, et al.
Publicado: (2020) -
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi
por: Hage, Hayat, et al.
Publicado: (2023)