Cargando…

Evaluation of linkage disequilibrium and its effect on non-parametric multipoint linkage analysis using two high density single-nucleotide polymorphism mapping panels

Genotype data from the Illumina Linkage III SNP panel (n = 4,720 SNPs) and the Affymetrix 10 k mapping array (n = 11,120 SNPs) were used to test the effects of linkage disequilibrium (LD) between SNPs in a linkage analysis in the Collaborative Study on the Genetics of Alcoholism pedigree collection...

Descripción completa

Detalles Bibliográficos
Autor principal:	Murray, Sarah Shaw
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866695/ https://www.ncbi.nlm.nih.gov/pubmed/16451700 http://dx.doi.org/10.1186/1471-2156-6-S1-S85

Ejemplares similares

Examining the effect of linkage disequilibrium on multipoint linkage analysis
por: Huang, Qiqing, et al.
Publicado: (2005)

Linkage disequilibrium of single-nucleotide polymorphism data: how sampling methods affect estimates of linkage disequilibrium
por: He, Qimei, et al.
Publicado: (2009)

Handling linkage disequilibrium in linkage analysis using dense single-nucleotide polymorphisms
por: Cho, Kelly, et al.
Publicado: (2007)

Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype
por: Lin, Hsiu-Fen, et al.
Publicado: (2005)

Linkage disequilibrium across two different single-nucleotide polymorphism genome scans
por: Peralta, Juan Manuel, et al.
Publicado: (2005)

Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium
por: Duggal, Priya, et al.
Publicado: (2005)

Analysis of high-density single-nucleotide polymorphism data: three novel methods that control for linkage disequilibrium between markers in a linkage analysis
por: Allen-Brady, Kristina, et al.
Publicado: (2007)

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees
por: Levinson, Douglas F, et al.
Publicado: (2005)

Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium
por: Goode, Ellen L, et al.
Publicado: (2005)

Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors
por: Sung, Yun Ju, et al.
Publicado: (2007)

A simple nonparametric multipoint procedure to test for linkage through mothers or fathers as well as imprinting effects in the presence of linkage
por: Lemire, Mathieu
Publicado: (2005)

Modeling the effect of an associated single-nucleotide polymorphism in linkage studies
por: Houwing-Duistermaat, Jeanine J, et al.
Publicado: (2005)

Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites
por: Wang, Shuang, et al.
Publicado: (2005)

Linkage and association analyses of microsatellites and single-nucleotide polymorphisms in nuclear families
por: Lin, Jennifer, et al.
Publicado: (2005)

Linkage analysis of GAW14 simulated data: comparison of multimarker, multipoint, and conditional approaches
por: Barber, Mathew J, et al.
Publicado: (2005)

Identifying single-nucleotide polymorphisms responsible for the linkage signal of rheumatoid arthritis on chromosome 6 by joint modeling of linkage and association
por: Lin, Wan-Yu, et al.
Publicado: (2007)

Multipoint identity-by-descent computations for single-point polymorphism and microsatellite maps
por: Hinrichs, Anthony L, et al.
Publicado: (2005)

Accuracy of haplotype estimation in a region of low linkage disequilibrium
por: Avery, Christy L, et al.
Publicado: (2005)

Microsatellites versus single-nucleotide polymorphisms in linkage analysis for quantitative and qualitative measures
por: Dunn, Gerald, et al.
Publicado: (2005)

Effect of genotyping error in model-free linkage analysis using microsatellite or single-nucleotide polymorphism marker maps
por: Thompson, Cheryl L, et al.
Publicado: (2005)

A Monte Carlo test of linkage disequilibrium for single nucleotide polymorphisms
por: Xu, Hongyan, et al.
Publicado: (2011)

The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets
por: McCaskie, Pamela A, et al.
Publicado: (2005)

Fine-scale linkage disequilibrium mapping: a comparison of coalescent-based and haplotype-clustering-based methods
por: Won, Sungho, et al.
Publicado: (2007)

Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach
por: Albers, Cornelis A, et al.
Publicado: (2007)

Linkage analysis of complex diseases using microsatellites and single-nucleotide polymorphisms: application to alcoholism
por: Nsengimana, Jérémie, et al.
Publicado: (2005)

Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses
por: Ulgen, Ayse, et al.
Publicado: (2005)

False-positive rates in two-point parametric linkage analysis
por: Szymczak, Silke, et al.
Publicado: (2014)

A method to detect single-nucleotide polymorphisms accounting for a linkage signal using covariate-based affected relative pair linkage analysis
por: Song, Yeunjoo E, et al.
Publicado: (2011)

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data
por: Kraja, Aldi T, et al.
Publicado: (2005)

Comparison of genome-wide single-nucleotide polymorphism linkage analyses in Caucasian and Hispanic NARAC families
por: Chen, Wei V, et al.
Publicado: (2007)

Cosmopolitan linkage disequilibrium maps
por: Gibson, Jane, et al.
Publicado: (2005)

A model-integrated multipoint Bayesian analysis of hypertension in the Framingham Heart Study data finds little evidence of linkage
por: Logue, Mark W, et al.
Publicado: (2003)

Linkage analysis of alcoholism-related electrophysiological phenotypes: genome scans with microsatellites compared to single-nucleotide polymorphisms
por: Bautista, Jocelyn F, et al.
Publicado: (2005)

Linkage analysis of the GAW14 simulated dataset with microsatellite and single-nucleotide polymorphism markers in large pedigrees
por: Yang, Xiaohong (Rose), et al.
Publicado: (2005)

Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis
por: Xing, Chao, et al.
Publicado: (2005)

Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits
por: Klein, Alison P, et al.
Publicado: (2005)

An exploration of sex-specific linkage disequilibrium on chromosome X in Caucasians from the COGA study
por: Cox, Miranda E, et al.
Publicado: (2005)

The quantitative trait linkage disequilibrium test: a more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification
por: Havill, Lorena M, et al.
Publicado: (2005)

Single-nucleotide polymorphism versus microsatellite markers in a combined linkage and segregation analysis of a quantitative trait
por: Daw, E Warwick, et al.
Publicado: (2005)

A comparison in association and linkage genome-wide scans for alcoholism susceptibility genes using single-nucleotide polymorphisms
por: Chiu, Yen-Feng, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_igi44elqp6o93mt11hhveqmvdu