Cargando…

An exploration of sex-specific linkage disequilibrium on chromosome X in Caucasians from the COGA study

This paper explores the decay of linkage disequilibrium (LD) on the autosomes and chromosome X. The extent of marker-marker LD is important for both linkage and association studies. The analysis of the Caucasian sample from the Collaborative Study on the Genetics of Alcoholism study revealed the exp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cox, Miranda E, Campbell, Joel K, Langefeld, Carl D
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866699/ https://www.ncbi.nlm.nih.gov/pubmed/16451696 http://dx.doi.org/10.1186/1471-2156-6-S1-S81

Ejemplares similares

COGA phenotypes and linkages on chromosome 2
por: Wiener, Howard W, et al.
Publicado: (2005)

Multilocus and interaction-based genome scan for alcoholism risk factors in Caucasian Americans: the COGA study
por: Williams, Adrienne H, et al.
Publicado: (2005)

Recursive partitioning models for linkage in COGA data
por: Xu, Wei, et al.
Publicado: (2005)

Multivariate linkage analysis using the electrophysiological phenotypes in the COGA alcoholism data
por: Zhang, Heping, et al.
Publicado: (2005)

A genome-wide linkage and association study using COGA data
por: Zhu, Xiaofeng, et al.
Publicado: (2005)

Comparison of linkage and association strategies for quantitative traits using the COGA dataset
por: McQueen, Matthew B, et al.
Publicado: (2005)

Linkage analysis and association analysis in the presence of linkage using age at onset of COGA alcoholism data
por: Zhong, Xiaoyun, et al.
Publicado: (2005)

Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage
por: Reck, Brian H, et al.
Publicado: (2005)

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages
por: Marroni, Fabio, et al.
Publicado: (2005)

Two novel quantitative trait linkage analysis statistics based on the posterior probability of linkage: application to the COGA families
por: Bartlett, Christopher W, et al.
Publicado: (2005)

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data
por: Kraja, Aldi T, et al.
Publicado: (2005)

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees
por: Levinson, Douglas F, et al.
Publicado: (2005)

Examining the effect of linkage disequilibrium on multipoint linkage analysis
por: Huang, Qiqing, et al.
Publicado: (2005)

Linkage disequilibrium of single-nucleotide polymorphism data: how sampling methods affect estimates of linkage disequilibrium
por: He, Qimei, et al.
Publicado: (2009)

A comparison of discrete versus continuous environment in a variance components-based linkage analysis of the COGA data
por: Viel, Kevin R, et al.
Publicado: (2005)

Comparison of marker types and map assumptions using Markov chain Monte Carlo-based linkage analysis of COGA data
por: Sieh, Weiva, et al.
Publicado: (2005)

Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium
por: Goode, Ellen L, et al.
Publicado: (2005)

Partial sex linkage and linkage disequilibrium on the guppy sex chromosome
por: Qiu, Suo, et al.
Publicado: (2022)

A variance component analysis on recombination rate in the COGA pedigrees
por: Wang, Lin, et al.
Publicado: (2005)

Handling linkage disequilibrium in linkage analysis using dense single-nucleotide polymorphisms
por: Cho, Kelly, et al.
Publicado: (2007)

Critical values and variation in type I error along chromosomes in the COGA dataset using the applied pseudo-trait method
por: Papanicolaou, George J, et al.
Publicado: (2005)

Simulation-based homozygosity mapping with the GAW14 COGA dataset on alcoholism
por: Libiger, Ondrej, et al.
Publicado: (2005)

A genome-wide scanning and fine mapping study of COGA data
por: Yang, Hsin-Chou, et al.
Publicado: (2005)

Accuracy of haplotype estimation in a region of low linkage disequilibrium
por: Avery, Christy L, et al.
Publicado: (2005)

Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium
por: Duggal, Priya, et al.
Publicado: (2005)

The quantitative trait linkage disequilibrium test: a more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification
por: Havill, Lorena M, et al.
Publicado: (2005)

Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype
por: Lin, Hsiu-Fen, et al.
Publicado: (2005)

Linkage disequilibrium across two different single-nucleotide polymorphism genome scans
por: Peralta, Juan Manuel, et al.
Publicado: (2005)

Comparison of genotype- and haplotype-based approaches for fine-mapping of alcohol dependence using COGA data
por: Pinnaduwage, Dushanthi, et al.
Publicado: (2005)

Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach
por: Albers, Cornelis A, et al.
Publicado: (2007)

Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research
por: Tintle, Nathan L, et al.
Publicado: (2005)

Analysis of high-density single-nucleotide polymorphism data: three novel methods that control for linkage disequilibrium between markers in a linkage analysis
por: Allen-Brady, Kristina, et al.
Publicado: (2007)

The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets
por: McCaskie, Pamela A, et al.
Publicado: (2005)

A regression based transmission/disequilibrium test for binary traits: the power of joint tests for linkage and association
por: Larkin, Emma K, et al.
Publicado: (2005)

Conditional genotype analysis: detecting secondary disease loci in linkage disequilibrium with a primary disease locus
por: Thomson, Glenys, et al.
Publicado: (2007)

Fine-scale linkage disequilibrium mapping: a comparison of coalescent-based and haplotype-clustering-based methods
por: Won, Sungho, et al.
Publicado: (2007)

Evaluation of linkage disequilibrium and its effect on non-parametric multipoint linkage analysis using two high density single-nucleotide polymorphism mapping panels
por: Murray, Sarah Shaw
Publicado: (2005)

Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14
por: Edenberg, Howard J, et al.
Publicado: (2005)

Comparison of genome-wide single-nucleotide polymorphism linkage analyses in Caucasian and Hispanic NARAC families
por: Chen, Wei V, et al.
Publicado: (2007)

Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations
por: Abasht, Behnam, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_8ujc2cnl9n2it7g9pgg82vndn4