Hawkeye: an interactive visual analytics tool for genome assemblies

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an asse...

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Detalles Bibliográficos
Autores principales: Schatz, Michael C, Phillippy, Adam M, Shneiderman, Ben, Salzberg, Steven L
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1868940/
https://www.ncbi.nlm.nih.gov/pubmed/17349036
http://dx.doi.org/10.1186/gb-2007-8-3-r34
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author Schatz, Michael C
Phillippy, Adam M
Shneiderman, Ben
Salzberg, Steven L
author_facet Schatz, Michael C
Phillippy, Adam M
Shneiderman, Ben
Salzberg, Steven L
author_sort Schatz, Michael C
collection PubMed
description Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.
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spelling pubmed-18689402007-05-16 Hawkeye: an interactive visual analytics tool for genome assemblies Schatz, Michael C Phillippy, Adam M Shneiderman, Ben Salzberg, Steven L Genome Biol Software Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye. BioMed Central 2007 2007-03-09 /pmc/articles/PMC1868940/ /pubmed/17349036 http://dx.doi.org/10.1186/gb-2007-8-3-r34 Text en Copyright ©2007 Schatz et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Schatz, Michael C
Phillippy, Adam M
Shneiderman, Ben
Salzberg, Steven L
Hawkeye: an interactive visual analytics tool for genome assemblies
title Hawkeye: an interactive visual analytics tool for genome assemblies
title_full Hawkeye: an interactive visual analytics tool for genome assemblies
title_fullStr Hawkeye: an interactive visual analytics tool for genome assemblies
title_full_unstemmed Hawkeye: an interactive visual analytics tool for genome assemblies
title_short Hawkeye: an interactive visual analytics tool for genome assemblies
title_sort hawkeye: an interactive visual analytics tool for genome assemblies
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1868940/
https://www.ncbi.nlm.nih.gov/pubmed/17349036
http://dx.doi.org/10.1186/gb-2007-8-3-r34
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AT salzbergstevenl hawkeyeaninteractivevisualanalyticstoolforgenomeassemblies

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