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New developments in the InterPro database
InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since th...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2007
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899100/ https://www.ncbi.nlm.nih.gov/pubmed/17202162 http://dx.doi.org/10.1093/nar/gkl841 |
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| author | Mulder, Nicola J. Apweiler, Rolf Attwood, Teresa K. Bairoch, Amos Bateman, Alex Binns, David Bork, Peer Buillard, Virginie Cerutti, Lorenzo Copley, Richard Courcelle, Emmanuel Das, Ujjwal Daugherty, Louise Dibley, Mark Finn, Robert Fleischmann, Wolfgang Gough, Julian Haft, Daniel Hulo, Nicolas Hunter, Sarah Kahn, Daniel Kanapin, Alexander Kejariwal, Anish Labarga, Alberto Langendijk-Genevaux, Petra S. Lonsdale, David Lopez, Rodrigo Letunic, Ivica Madera, Martin Maslen, John McAnulla, Craig McDowall, Jennifer Mistry, Jaina Mitchell, Alex Nikolskaya, Anastasia N. Orchard, Sandra Orengo, Christine Petryszak, Robert Selengut, Jeremy D. Sigrist, Christian J. A. Thomas, Paul D. Valentin, Franck Wilson, Derek Wu, Cathy H. Yeats, Corin |
| author_facet | Mulder, Nicola J. Apweiler, Rolf Attwood, Teresa K. Bairoch, Amos Bateman, Alex Binns, David Bork, Peer Buillard, Virginie Cerutti, Lorenzo Copley, Richard Courcelle, Emmanuel Das, Ujjwal Daugherty, Louise Dibley, Mark Finn, Robert Fleischmann, Wolfgang Gough, Julian Haft, Daniel Hulo, Nicolas Hunter, Sarah Kahn, Daniel Kanapin, Alexander Kejariwal, Anish Labarga, Alberto Langendijk-Genevaux, Petra S. Lonsdale, David Lopez, Rodrigo Letunic, Ivica Madera, Martin Maslen, John McAnulla, Craig McDowall, Jennifer Mistry, Jaina Mitchell, Alex Nikolskaya, Anastasia N. Orchard, Sandra Orengo, Christine Petryszak, Robert Selengut, Jeremy D. Sigrist, Christian J. A. Thomas, Paul D. Valentin, Franck Wilson, Derek Wu, Cathy H. Yeats, Corin |
| author_sort | Mulder, Nicola J. |
| collection | PubMed |
| description | InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (), and for download by anonymous FTP (). The InterProScan search tool is now also available via a web service at . |
| format | Text |
| id | pubmed-1899100 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2007 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-18991002007-06-26 New developments in the InterPro database Mulder, Nicola J. Apweiler, Rolf Attwood, Teresa K. Bairoch, Amos Bateman, Alex Binns, David Bork, Peer Buillard, Virginie Cerutti, Lorenzo Copley, Richard Courcelle, Emmanuel Das, Ujjwal Daugherty, Louise Dibley, Mark Finn, Robert Fleischmann, Wolfgang Gough, Julian Haft, Daniel Hulo, Nicolas Hunter, Sarah Kahn, Daniel Kanapin, Alexander Kejariwal, Anish Labarga, Alberto Langendijk-Genevaux, Petra S. Lonsdale, David Lopez, Rodrigo Letunic, Ivica Madera, Martin Maslen, John McAnulla, Craig McDowall, Jennifer Mistry, Jaina Mitchell, Alex Nikolskaya, Anastasia N. Orchard, Sandra Orengo, Christine Petryszak, Robert Selengut, Jeremy D. Sigrist, Christian J. A. Thomas, Paul D. Valentin, Franck Wilson, Derek Wu, Cathy H. Yeats, Corin Nucleic Acids Res Articles InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (), and for download by anonymous FTP (). The InterProScan search tool is now also available via a web service at . Oxford University Press 2007-01 /pmc/articles/PMC1899100/ /pubmed/17202162 http://dx.doi.org/10.1093/nar/gkl841 Text en © 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Articles Mulder, Nicola J. Apweiler, Rolf Attwood, Teresa K. Bairoch, Amos Bateman, Alex Binns, David Bork, Peer Buillard, Virginie Cerutti, Lorenzo Copley, Richard Courcelle, Emmanuel Das, Ujjwal Daugherty, Louise Dibley, Mark Finn, Robert Fleischmann, Wolfgang Gough, Julian Haft, Daniel Hulo, Nicolas Hunter, Sarah Kahn, Daniel Kanapin, Alexander Kejariwal, Anish Labarga, Alberto Langendijk-Genevaux, Petra S. Lonsdale, David Lopez, Rodrigo Letunic, Ivica Madera, Martin Maslen, John McAnulla, Craig McDowall, Jennifer Mistry, Jaina Mitchell, Alex Nikolskaya, Anastasia N. Orchard, Sandra Orengo, Christine Petryszak, Robert Selengut, Jeremy D. Sigrist, Christian J. A. Thomas, Paul D. Valentin, Franck Wilson, Derek Wu, Cathy H. Yeats, Corin New developments in the InterPro database |
| title | New developments in the InterPro database |
| title_full | New developments in the InterPro database |
| title_fullStr | New developments in the InterPro database |
| title_full_unstemmed | New developments in the InterPro database |
| title_short | New developments in the InterPro database |
| title_sort | new developments in the interpro database |
| topic | Articles |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899100/ https://www.ncbi.nlm.nih.gov/pubmed/17202162 http://dx.doi.org/10.1093/nar/gkl841 |
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