Cargando…

Allelic association studies of genome wide association data can reveal errors in marker position assignments

BACKGROUND: Genome wide association (GWA) studies provide the opportunity to develop new kinds of analysis. Analysing pairs of markers from separate regions might lead to the detection of allelic association which might indicate an interaction between nearby genes. METHODS: 396,591 markers typed in...

Descripción completa

Detalles Bibliográficos
Autor principal:	Curtis, David
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899178/ https://www.ncbi.nlm.nih.gov/pubmed/17559648 http://dx.doi.org/10.1186/1471-2156-8-30

Ejemplares similares

A multi-marker test based on family data in genome-wide association study
por: Zhang, Zhaogong, et al.
Publicado: (2007)

A new association test based on disease allele selection for case–control genome-wide association studies
por: Chen, Zhongxue
Publicado: (2014)

Genotyping and inflated type I error rate in genome-wide association case/control studies
por: Sampson, Joshua N, et al.
Publicado: (2009)

An Analysis Pipeline for Genome-wide Association Studies
por: Stefanov, Stefan, et al.
Publicado: (2008)

Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis
por: Li, Ting-Ting, et al.
Publicado: (2020)

Positional error in automated geocoding of residential addresses
por: Cayo, Michael R, et al.
Publicado: (2003)

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
por: Voorrips, Roeland E., et al.
Publicado: (2022)

On coding genotypes for genetic markers with multiple alleles in genetic association study of quantitative traits
por: Wang, Tao
Publicado: (2011)

Data mining and machine learning approaches for the integration of genome-wide association and methylation data: methodology and main conclusions from GAW20
por: Darst, Burcu, et al.
Publicado: (2018)

Genome-wide methylation data mirror ancestry information
por: Rahmani, Elior, et al.
Publicado: (2017)

Methods and results from the genome-wide association group at GAW20
por: Wang, Xuexia, et al.
Publicado: (2018)

Analysis of genome-wide association study data using the protein knowledge base
por: Ballouz, Sara, et al.
Publicado: (2011)

A pragmatic suggestion for dealing with results for candidate genes obtained from genome wide association studies
por: Curtis, David, et al.
Publicado: (2007)

High-throughput retrotransposon-based fluorescent markers: improved information content and allele discrimination
por: Knox, Maggie, et al.
Publicado: (2009)

An improved allele-specific PCR primer design method for SNP marker analysis and its application
por: Liu, Jing, et al.
Publicado: (2012)

Power estimation and sample size determination for replication studies of genome-wide association studies
por: Jiang, Wei, et al.
Publicado: (2016)

Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data
por: Holford, Matthew E., et al.
Publicado: (2009)

Can-Seq: a PCR and DNA sequencing strategy for identifying new alleles of known and candidate genes
por: Cao, Jiangling, et al.
Publicado: (2020)

High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq)
por: Preston, Jessica L., et al.
Publicado: (2016)

Isolation, purification, and full NMR assignments of cyclopamine from Veratrum californicum
por: Oatis, John E, et al.
Publicado: (2008)

Automation of gene assignments to metabolic pathways using high-throughput expression data
por: Popescu, Liviu, et al.
Publicado: (2005)

Estimands in epigenome-wide association studies
por: Kruppa, Jochen, et al.
Publicado: (2021)

Haplotype allelic classes for detecting ongoing positive selection
por: Hussin, Julie, et al.
Publicado: (2010)

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.)
por: Ozerov, Mikhail, et al.
Publicado: (2013)

Genome-wide algorithm for detecting CNV associations with diseases
por: Xu, Yaji, et al.
Publicado: (2011)

Enrichment of statistical power for genome-wide association studies
por: Li, Meng, et al.
Publicado: (2014)

Mixed logistic regression in genome-wide association studies
por: Milet, Jacqueline, et al.
Publicado: (2020)

MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications
por: Hadigol, Mohammad, et al.
Publicado: (2018)

Deep mixed model for marginal epistasis detection and population stratification correction in genome-wide association studies
por: Wang, Haohan, et al.
Publicado: (2019)

MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement
por: Shi, Guanqun, et al.
Publicado: (2010)

Multi-allelic haplotype model based on genetic partition for genomic prediction and variance component estimation using SNP markers
por: Da, Yang
Publicado: (2015)

Use of attribute association error probability estimates to evaluate quality of medical record geocodes
por: Klaus, Christian A., et al.
Publicado: (2015)

r2VIM: A new variable selection method for random forests in genome-wide association studies
por: Szymczak, Silke, et al.
Publicado: (2016)

Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies
por: Momen, Mehdi, et al.
Publicado: (2019)

PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities
por: Malekpour, Seyed Amir, et al.
Publicado: (2016)

Genome-wide Two-marker linkage disequilibrium mapping of quantitative trait loci
por: Yang, Jie, et al.
Publicado: (2014)

Mixture SNPs effect on phenotype in genome-wide association studies
por: Wang, Ling, et al.
Publicado: (2015)

The complete compositional epistasis detection in genome-wide association studies
por: Wan, Xiang, et al.
Publicado: (2013)

Robust methods for population stratification in genome wide association studies
por: Liu, Li, et al.
Publicado: (2013)

Estimation of a significance threshold for genome-wide association studies
por: Kaler, Avjinder S., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_0s1kaa3rjgtmsd7a89ek31erg6